Caenorhabditis briggsae (nematode): CBG_10825
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Entry
CBG_10825 CDS
T01054
Symbol
Cbr-elpc-1
Name
(RefSeq) Protein CBR-ELPC-1
KO
K11373
elongator complex protein 1
Organism
cbr
Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cbr03016
]
CBG_10825 (Cbr-elpc-1)
Transfer RNA biogenesis [BR:
cbr03016
]
Eukaryotic type
tRNA modification factors
Elongator complex
CBG_10825 (Cbr-elpc-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_ELP1_1st
A-sol_ELP1
HB_ELP1
ANAPC4_WD40
Beta-prop_EML_2
TPR_ELP1
Beta-prop_WDR35_TULP_N
Beta-prop_ELP1_2nd
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
8581989
NCBI-ProteinID:
XP_045094369
WormBase:
CBG10825
LinkDB
All DBs
Position
I:complement(6569484..6573561)
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AA seq
1214 aa
AA seq
DB search
MKNLQIGRVKTFEKTKLAGCDLFAVHPILETIAVSTKNELILLEDQVVSSTINWSNERNG
VQVISLAFRTDGDQIVAILADGRALVIEDGSVIELEVAEIENSTVTAAEWTGDEQTLALA
DNQTLYLADSSLVPFVVRPLNFSESDRKSVPVNVGWGSESTQFRGSAGKLKPGEKIEKER
EDVEQVSKQTSVHWRWDGEIVAVSHYSEQSKIRNLTIFDKNGEILNNMNIRNIYLSHCFA
HKPNANLLCSAILEQGSDDRIVFYERNGETRNSYVVKWPTNQNESKRVIEKIEWNSTGTI
LAMLTVYENSRRLELWHLSNYEFTRKLCWRFPESESSVIWKWSTVDSQNVEILLGSGQFF
SVHINPVSSFSDAISQNVVVATDELRMYSLYRRVVPPPMCDHSIRCLSDITGKLFPVSLP
EETMRIYDISVSQDSDDYKFDSERASIDEVLHEEVTDGIICGFVYDEPTESFIIWVASHG
KQIICRVGANFEKFLEGDNIGWMGVNPQNSHIEVAFNNGKFLDLTTSDEIFKIEEFASVE
VHFIQNRHVILADNSTIFIDSSKVSQDAASIMTRGNDILLIDFDNKLRFVDVESGKTLED
IRDVEAGSELVACDSGSANVILQAARGNLETIQPRRYVMAQTREYLDKKQYIQSFKWMKK
HRVDMSYAMKYKGEELENDMVIWLASTNDSQLLEQLLVSCTEVFEFEGSSLCMSVARFIS
DIEDVDRKTKMFPLLLTALLRLKPSKINECLKEVQEHVEKVVNRKDVFTRDSLHHISFFV
PAKELFNCALSTYDLKLAQQVAEASNYDPKEYLPVLNKLNRIGCTLERQYRINVVRDAWI
DAIRSLLVLDSSEDRGSEEVWWNDIKDIIQREWLHQKALTLVNPGDKRYKECCELYAIEL
ERKIHWREAALFFELSGNTEKTLKCWEMSRDVDGLAASARRLAVDSGKLKIHAIKMSTTL
REARQPKELAKALKLAGSSSNQIVQTLCDAFEWTEASREVEVGKEESLKIAAVSRNEQIL
LDLKRRQTEFEKYKKRLIVVRENKLKRVEQFAAGEVDDLRDDISVISSISSRSGSSKVSM
ASTVRRKKQIEKKKSSLKEGGEYEDSALLNVLAENYKWLENIGNELSQLIPLLMTTGHFT
EALKMKSVYDEFVLKLQKSKASIWPENLSIQQLPGPLYTLFDPNQEPSPIPMPPIFRLEP
ELVAPSASFPSVFL
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatctacaaattggtcgggtgaaaacttttgaaaaaacaaaactcgcaggctgc
gacttgtttgctgttcatcctatcctcgaaacaattgctgtgtcgacaaaaaatgaactt
attcttctagaggaccaagttgttagcagtacaataaactggagtaatgaaagaaatgga
gtccaagtcatttcattggcgtttcgaaccgatggagatcaaattgtggcgattttggct
gatgggcgtgctcttgtaattgaagatggatcagtaatagaactggaagtggcagaaatt
gaaaattctacagtaactgctgcagaatggactggtgatgaacaaacacttgctctggcc
gacaatcaaactttgtatctcgctgattcttccttggttccgttcgtcgtgagacctcta
aatttctcagaaagcgatagaaaatctgttcctgtgaacgttggatggggatcggaaagt
acgcagttcagaggatccgctgggaagttgaaacccggagagaagattgagaaggagcga
gaagatgtggaacaagtctcaaaacaaacttcagttcattggagatgggatggagagatt
gtggcagtttcccactattccgaacagtccaaaattcgaaatctaacgattttcgataaa
aatggtgagattttgaacaacatgaacatccgaaacatctatctatcccactgctttgct
cacaaaccgaacgcaaacttgctatgctctgcaatactggaacaaggatcagatgataga
attgtgttttacgagaggaatggagaaacacgcaatagttatgtcgtcaaatggccaaca
aatcagaatgaaagcaagagagtcatagaaaaaatcgaatggaattctactggaaccatt
ctagcgatgctaacggtttacgagaatagtagaagactggagttatggcatctctccaat
tacgaattcactcgaaaactctgttggcgattccctgaaagcgaatcatctgtaatctgg
aagtggagcacagtggatagtcaaaacgtggaaattcttctcggatcaggacaattcttc
tctgttcacatcaacccagtttcctcgttttccgacgctatctctcagaatgtcgtcgta
gccacagatgagcttcgtatgtattctctctaccgtcgagtcgttcctccaccgatgtgt
gaccattccatcaggtgcctatcggatattactggaaaattatttcctgtgagtttacct
gaagagacaatgcgtatatatgacatttcagtcagccaagattccgacgactacaagttc
gatagcgagcgtgcgtctatcgacgaggttcttcacgaagaagttacggatggaatcatt
tgtggctttgtctatgacgagccaaccgaatcgtttattatttgggtcgctagtcacggt
aaacaaatcatctgtcgtgttggtgctaacttcgagaagtttctggaaggagacaatatc
gggtggatgggcgtgaatcctcagaattctcacattgaagttgcttttaataatggaaag
tttcttgatttgactacgagcgatgagatcttcaaaatcgaggaattcgcttctgttgaa
gttcacttcatccagaatcgccatgtcatcctcgctgacaactccacaatcttcatcgac
tcatcaaaggtttctcaagacgctgcctccattatgactcgaggaaatgacattctgctc
attgattttgataacaaacttcgattcgtcgatgtggagtcgggtaaaactctagaagac
attcgcgatgtggaagcgggaagtgaactagtagcatgtgattctggatcagctaacgtg
attcttcaagcagccagaggaaacctggaaacaatccaaccacgtagatatgtgatggcc
cagactcgtgaatatctcgacaaaaagcagtacatccaatcgttcaaatggatgaaaaag
catcgtgtcgatatgtcatacgcgatgaagtacaaaggagaagagctagaaaatgatatg
gtgatatggttggcaagtaccaatgattcacaactgctggaacaacttttagtcagttgt
actgaagttttcgagtttgaaggatcttccctttgtatgtcagtagctcgatttatcagt
gatatcgaagatgttgatcggaaaactaaaatgtttccactgcttctaacggctcttcta
cgattgaaaccatcgaaaatcaacgagtgtttgaaagaggtccaggagcatgtggagaaa
gttgttaaccgaaaagatgtcttcactcgtgacagcttacaccatatatcctttttcgtg
ccagccaaagaacttttcaattgtgcactttctacttatgacctcaagttggctcagcaa
gttgcagaagcttcaaactacgatccaaaagagtatcttcctgttctcaacaaactcaat
agaattggatgtacacttgaaagacaatatagaattaatgttgtgagagatgcatggatc
gacgcaattcgatctttgctcgttttggattctagtgaagatcgaggatcagaagaagtg
tggtggaatgatattaaagatatcattcaaagagaatggctgcatcagaaggcgttgacg
cttgtgaatccaggagacaaacgatataaggagtgttgtgagttgtatgctatcgaattg
gagagaaaaatccattggagagaggcggcgctgttctttgaactttctgggaatacagag
aagactttgaagtgttgggaaatgtcgagagacgtggatggtcttgctgcttctgctcgt
cgtcttgcagttgattctggaaaattgaagatccatgctatcaaaatgagtacgactctc
cgggaagccaggcaaccaaaggagttggcaaaagcattaaaacttgcgggatcttcaagt
aatcaaattgttcaaacactgtgtgatgcattcgaatggacggaagccagtcgagaagtc
gaagttgggaaagaagaaagtttaaaaatcgcagcagtcagtcgtaatgagcaaattttg
ttggacctcaaaagaagacaaaccgagtttgagaagtataagaaacgattgatagttgtc
cgagagaacaaactgaagagagttgaacaattcgctgctggagaagtagatgaccttcgt
gatgatatttccgtcatttcgagtatcagttcaagatccggatcttcaaaagtgtccatg
gcatctactgtaagaagaaagaagcaaattgaaaagaagaagagctctttgaaagaagga
ggagaatatgaagactcagctctgctgaatgttctcgctgagaattataaatggctggaa
aacataggaaatgaactatcccagttgattccgctgctcatgactactggacacttcaca
gaagctttgaaaatgaaaagtgtttacgacgagtttgtactgaagcttcagaagagcaag
gcttcgatttggcctgagaatttgtctattcaacaactaccaggaccactctatacgctg
tttgatccaaaccaagagccatcgccaattccgatgccaccaatcttcaggctcgagcca
gaacttgtcgctccatccgcatcattcccatccgtatttctataa
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