Caenorhabditis briggsae (nematode): CBG_11979
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Entry
CBG_11979 CDS
T01054
Name
(RefSeq) Protein CBG11979
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CBG_11979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_11979
03041 Spliceosome [BR:
cbr03041
]
CBG_11979
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
CBG_11979
Spliceosome [BR:
cbr03041
]
Complex B
Other components
Prp19-related factors
CBG_11979
Complex C
CBG_11979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Suf
TPR_19
TPR_15
TPR_8
TPR_16
TPR_2
ARM_TT21
TPR_1
TPR_10
Motif
Other DBs
NCBI-GeneID:
8588271
NCBI-ProteinID:
XP_045094719
WormBase:
CBG11979
LinkDB
All DBs
Position
I:7365420..7368409
Genome browser
AA seq
898 aa
AA seq
DB search
MTDKENSELASGFVEVTKKIAKAPNTEMQGIVSAPEDIPFEEDIIRNSTSVNCWQRYIDH
KRQNKSPAKQVFLIYERALAIFERSYKLWYHYLKYRESTIVNKCPTENSWRSLCDTYERC
LMRLHKMPRIWICYCEVMIKRGLITETRRVFDRALRSLPVTQHMRIWPMYIDFLTSHDLP
ETTIRVYRRYLKINPKAREDYVEYLIERDQIDEAAKELTTLVNQDQNVSEKGQTSHQLWT
KLCTLISENPVKIFSLNVDAIIRQGIYRYTDQVGFLWCSLANYYSNNAEFEKARDVYEEA
IAKVSTVRDFAQVYDAYAAFEEGEVSIMMGQIEQSGDQEGEVDLEWMFQRYQNLMERKNE
LMNSVLLRQNPHNVGEWLNRVDIYEGNYDKQIETFKEAVKSVNPKIQVGKVRDLWIGFAK
LYESNNDLDAARRTFETAVVSQFGGVSELANVWCAYAEMEMKHNRPRAALAIMQRACSVP
RPGEHENMQSVQARVHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQMIMNYA
VFLEENEYFELAFQAYEKGIALFKWPSVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLE
NCPPTHSKCMLFLFIGFKTFLSFQIYFFCMPNSKKNMDLLVTLCQFTTEQLLEWTVLTCI
WYFLVMSETSTQIFLQMYNIYIKKVQEMYGIAQCRPIFERAISELPEDKSRSMSLRYAQL
ETTVGEIDRARAIYAHAAEISDPKVHVKFWDTWKNFEVAHGNEATVRDMLRVRRSVEASY
NVNVTLTSVQMRVDAERKAQETTSGSANPMESLDQQAHVSSDGGTVTQLSMNKGNISFVR
GASKTVQQDTTENPDEIDLDDDEEDEDEGKEGEDMDIQTKTVPAQIFGSLKLADESDA
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgacagataaagaaaacagtgaattggcgagcggcttcgtcgaagttacgaaaaaaatc
gcgaaggcaccgaatactgaaatgcaagggattgtgagtgcaccagaagatattccgttc
gaagaagacatcattcgaaactcaacttcagttaactgttggcaaagatatattgatcac
aagagacaaaataagtcgccagcaaagcaagttttcttgatttatgaacgggctctcgca
atcttcgaaagaagctacaaactttggtatcactacctgaaatatcgggaaagcactatt
gtcaacaaatgtcctaccgagaattcatggagatcactctgtgatacttacgaaagatgc
ctaatgcgactgcataagatgcctcggatctggatttgctactgcgaagtaatgataaaa
cgaggtttgataactgagactcgacgagtttttgatagagcacttcgatctcttccggtg
actcagcacatgagaatttggcctatgtacatcgactttctgaccagccacgatcttccg
gaaacaactatccgtgtttatagaagatacctcaaaataaatcctaaagctcgcgaagat
tacgttgaatacttgatcgaaagggaccaaatcgacgaagccgcaaaggagttgacgact
cttgtgaaccaagatcaaaacgtttcggaaaagggtcaaacttctcatcaactctggaca
aagctatgtactttgatatcggagaaccctgtcaaaattttttcattaaacgttgatgct
atcattcgtcaaggaatttatcgttacaccgatcaagtgggattcttgtggtgctcgctg
gctaattattacagtaataacgccgaattcgagaaggctcgagatgtctatgaagaggcc
attgcaaaagtatccaccgttcgtgatttcgcacaggtgtatgatgcttacgcagctttt
gaagaaggagaagtgtcgattatgatgggacagatagaacaaagcggagaccaagaggga
gaagtcgatttagaatggatgttccagagatatcaaaatctcatggagcgtaaaaatgag
ttgatgaacagtgttcttttgcgacaaaatcctcacaatgtgggcgaatggctgaataga
gtggatatctacgaaggaaactacgataagcagattgaaacattcaaagaagcagtgaag
tcagtgaacccgaaaattcaagttggaaaagttcgggatctttggatcggtttcgccaag
ctgtatgagagcaacaacgacctggatgccgctcgtagaacctttgagacggcagtagtt
tcacagtttggaggtgtaagcgagttggcaaacgtatggtgtgcttatgctgaaatggaa
atgaaacacaatcgcccaagggctgcactagctattatgcaaagagcttgttctgttccg
aggcctggagaacacgagaatatgcaatcagtccaagccagagttcaccgaagtcctatc
ttgtgggccatgtatgcagactacgaagaatgttgtggcaccgttgagtcgtgtcgtaaa
gtctatgacaaaatgatagaactgcgcgtagcatcaccacaaatgataatgaactacgcc
gtcttcctcgaggagaatgaatatttcgagcttgctttccaggcatacgagaaggggatt
gcattgttcaaatggccaagtgtcttcgatatttggaacacttatcttgtcaaattcata
aaaagatatggtggtaaaaagctggaaagagctcgagatctatttgaacagtgcctcgag
aactgcccgccgactcattccaaatgcatgttattcttatttatcggcttcaaaacattc
ttatcatttcagatatatttcttctgtatgccaaactcgaagaagaacatggacttgctc
gtcacgctctgtcaatttacaacagagcaacttctggagtggaccgttctgacatgcatt
tggtattttttagttatgtctgaaacttcaacgcagatttttttgcagatgtataatatc
tacatcaaaaaggttcaagaaatgtatggaattgctcagtgtcgtcctattttcgagcgc
gcaatttcggaactaccagaagacaaatctcgatcaatgagcttgcgctatgcacagtta
gagacaactgtcggagaaatcgaccgagcaagagcaatatatgcacacgcagcagaaatc
tcggatccaaaggttcatgttaaattttgggatacctggaagaactttgaagttgcccac
ggaaatgaagctactgttcgtgatatgctccgcgttcgtcgctccgttgaagcatcttac
aatgttaacgtcacactgacatccgtgcagatgcgtgtggatgctgaacgaaaagcacaa
gaaacgacaagtggatctgctaatcctatggagtctcttgaccaacaagcacatgtgtca
tctgatggaggtacagtcacacaattatccatgaacaagggtaatatctcattcgtccgc
ggagctagcaaaacagttcaacaagatacgactgaaaatcccgatgagattgatttggat
gacgacgaggaagatgaggacgaaggaaaggaaggagaggacatggacattcaaactaag
acggtgcctgctcaaattttcggttccttgaagcttgctgatgaaagcgatgcctga
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