Caenorhabditis briggsae (nematode): CBG_12250
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Entry
CBG_12250 CDS
T01054
Symbol
Cbr-snr-5
Name
(RefSeq) Protein CBR-SNR-5
KO
K11098
small nuclear ribonucleoprotein F
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CBG_12250 (Cbr-snr-5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_12250 (Cbr-snr-5)
03041 Spliceosome [BR:
cbr03041
]
CBG_12250 (Cbr-snr-5)
03032 DNA replication proteins [BR:
cbr03032
]
CBG_12250 (Cbr-snr-5)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
CBG_12250 (Cbr-snr-5)
Spliceosome [BR:
cbr03041
]
Complex A
U1 snRNP components
Sm proteins
CBG_12250 (Cbr-snr-5)
U2 snRNP components
CBG_12250 (Cbr-snr-5)
Complex B
U1 snRNP components
CBG_12250 (Cbr-snr-5)
U4/U6.U5 tri-snRNP components
CBG_12250 (Cbr-snr-5)
Complex C
U2 snRNP components
CBG_12250 (Cbr-snr-5)
DNA replication proteins [BR:
cbr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
CBG_12250 (Cbr-snr-5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF6454
Motif
Other DBs
NCBI-GeneID:
8584661
NCBI-ProteinID:
XP_002642667
WormBase:
CBG12250
UniProt:
A0AAE9DFI5
A8XF34
LinkDB
All DBs
Position
III:complement(12436895..12437927)
Genome browser
AA seq
86 aa
AA seq
DB search
MSAVQPVNPKPFLNSLTGKNVVCKLKWGMEYKGILVAVDSYMNLQLANAEEYIDGNNTGN
LGEILIRCNNVLYVGGQDGETGETSA
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgtccagccagtcaacccaaagccattcctgaacagtctcaccggcaagaac
gtcgtgtgcaagctcaagtggggaatggagtacaaaggaattctcgtcgccgtcgactcg
tacatgaacctgcagctcgccaacgccgaggagtacatcgacggaaacaacacgggaaat
ctcggagagattctcatcagatgcaacaacgtgctctacgtcggcggtcaggacggagaa
accggagagacgagtgcctaa
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