KEGG   Caenorhabditis briggsae (nematode): CBG_12350
Entry
CBG_12350         CDS       T01054                                 
Symbol
Cbr-rpb-3
Name
(RefSeq) Protein CBR-RPB-3
  KO
K03011  DNA-directed RNA polymerase II subunit RPB3
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03020  RNA polymerase
cbr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CBG_12350 (Cbr-rpb-3)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CBG_12350 (Cbr-rpb-3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbr03021]
    CBG_12350 (Cbr-rpb-3)
   03400 DNA repair and recombination proteins [BR:cbr03400]
    CBG_12350 (Cbr-rpb-3)
Transcription machinery [BR:cbr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     CBG_12350 (Cbr-rpb-3)
DNA repair and recombination proteins [BR:cbr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CBG_12350 (Cbr-rpb-3)
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L
Other DBs
NCBI-GeneID: 8581630
NCBI-ProteinID: XP_002639637
WormBase: CBG12350
UniProt: A8XFM5
LinkDB
Position
I:complement(8971244..8972540)
AA seq 280 aa
MPYANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLH
DEFIAHRMGLIPFLSDYHVEKMQYTRCECAEFCDECSIPFILQTKCTDEATLAVTTADLR
PLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKGQELNLKAYAKKGFGKEHAKW
NPTCGVAFEYDPDNALRHTIYPNVEEWPKSDHSSLPEDSAEKEAPFDQNAKPNKFWFSIE
GTGALPVQRIVTMGIGILKRKLEELNMALSNELQAHAQQQ
NT seq 843 nt   +upstreamnt  +downstreamnt
atgccgtacgcaaatcagccaaacatcgaagtcacagaactcacaaacgatttaatcaaa
tttgtgctatgggacacagatttgagtgttgctaattcattgagacgcgtctttatggca
gaagttccaactatcgccatcgattgggttcaaattgaaacaaacacatcggttcttcat
gatgagttcattgctcaccgaatgggactaattccatttctgtcagactaccatgtcgag
aaaatgcagtacaccagatgtgaatgtgccgaattctgcgatgaatgttccattccattc
attctgcaaacgaagtgtactgatgaagctactttggcagttaccacagcagatttgcgc
cctctgggcgttgaaacgactgttcgtccagcctgcggagaagcccttcgcgaacgcgga
gcagttcgagatgagtttcacgcccgagaagaaattctgattgtgaaattgcgaaaagga
caggaactaaatctgaaagcatacgcaaaaaaaggattcggaaaggagcatgcgaaatgg
aacccgacatgtggagttgcattcgagtacgatccggacaacgctcttcggcacacaatt
tatccgaacgtcgaggaatggccaaaaagtgatcactcttctttgccagaagacagcgcc
gaaaaagaggctccgttcgatcaaaatgcaaaaccaaacaaattctggttttcgattgaa
ggaactggtgcactcccagttcaacgaattgtgacaatgggaatcggaattctcaagaga
aagttggaagagctgaatatggctctatccaatgagcttcaggctcatgcccaacagcag
tga

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