Caenorhabditis briggsae (nematode): CBG_12350
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Entry
CBG_12350 CDS
T01054
Symbol
Cbr-rpb-3
Name
(RefSeq) Protein CBR-RPB-3
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03020
RNA polymerase
cbr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CBG_12350 (Cbr-rpb-3)
09124 Replication and repair
03420 Nucleotide excision repair
CBG_12350 (Cbr-rpb-3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbr03021
]
CBG_12350 (Cbr-rpb-3)
03400 DNA repair and recombination proteins [BR:
cbr03400
]
CBG_12350 (Cbr-rpb-3)
Transcription machinery [BR:
cbr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CBG_12350 (Cbr-rpb-3)
DNA repair and recombination proteins [BR:
cbr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CBG_12350 (Cbr-rpb-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
8581630
NCBI-ProteinID:
XP_002639637
WormBase:
CBG12350
UniProt:
A8XFM5
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Position
I:complement(8971244..8972540)
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AA seq
280 aa
AA seq
DB search
MPYANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLH
DEFIAHRMGLIPFLSDYHVEKMQYTRCECAEFCDECSIPFILQTKCTDEATLAVTTADLR
PLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKGQELNLKAYAKKGFGKEHAKW
NPTCGVAFEYDPDNALRHTIYPNVEEWPKSDHSSLPEDSAEKEAPFDQNAKPNKFWFSIE
GTGALPVQRIVTMGIGILKRKLEELNMALSNELQAHAQQQ
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgccgtacgcaaatcagccaaacatcgaagtcacagaactcacaaacgatttaatcaaa
tttgtgctatgggacacagatttgagtgttgctaattcattgagacgcgtctttatggca
gaagttccaactatcgccatcgattgggttcaaattgaaacaaacacatcggttcttcat
gatgagttcattgctcaccgaatgggactaattccatttctgtcagactaccatgtcgag
aaaatgcagtacaccagatgtgaatgtgccgaattctgcgatgaatgttccattccattc
attctgcaaacgaagtgtactgatgaagctactttggcagttaccacagcagatttgcgc
cctctgggcgttgaaacgactgttcgtccagcctgcggagaagcccttcgcgaacgcgga
gcagttcgagatgagtttcacgcccgagaagaaattctgattgtgaaattgcgaaaagga
caggaactaaatctgaaagcatacgcaaaaaaaggattcggaaaggagcatgcgaaatgg
aacccgacatgtggagttgcattcgagtacgatccggacaacgctcttcggcacacaatt
tatccgaacgtcgaggaatggccaaaaagtgatcactcttctttgccagaagacagcgcc
gaaaaagaggctccgttcgatcaaaatgcaaaaccaaacaaattctggttttcgattgaa
ggaactggtgcactcccagttcaacgaattgtgacaatgggaatcggaattctcaagaga
aagttggaagagctgaatatggctctatccaatgagcttcaggctcatgcccaacagcag
tga
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