Caenorhabditis briggsae (nematode): CBG_12465
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Entry
CBG_12465 CDS
T01054
Name
(RefSeq) Protein CBG12465
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbr03041
]
CBG_12465
03009 Ribosome biogenesis [BR:
cbr03009
]
CBG_12465
Enzymes [BR:
cbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBG_12465
Spliceosome [BR:
cbr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CBG_12465
Ribosome biogenesis [BR:
cbr03009
]
Eukaryotic type
90S particles
Helicases
CBG_12465
Pre-60S particles
CBG_12465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
SecA_DEAD
CMS1
Motif
Other DBs
NCBI-GeneID:
8581730
NCBI-ProteinID:
XP_002639737
WormBase:
CBG12465
UniProt:
A8XFI0
LinkDB
All DBs
Position
I:<8522800..>8525009
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AA seq
542 aa
AA seq
DB search
MGIDVKKKVLKRKLKQMKDGHEKKKAKEVVEEQPMEDDDGEKVEDEEQQAEENTGTKVSE
FLTKTTFASLDGKVNSNLLKSVQRLGFTTLTEIQAKTIDPLLEGKDVLASAKTGSGKTLA
FLLPAIELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLTELLEGSNLTFGLVMGGSNRS
AEKDKLAKGVSILVATPGRLLDHLQNDNFLVRNLKCLIIDEADRILDIGFEIEMQQVLRH
LPKQRQSMLFSATHSPKVDELVKLALHSNPVRVSVNEKAEEATVEGLQQGYIVAPSDKRL
LLLFTFLKKNKTKKVMVFFSSCNSVKFHHELLNYIDVPCMSIHGKQKQQKRTSTFFTFCQ
AESGILLCTDVAARGLDIPAVDWIVQYDPPDEPREYIHRVGRTARGTNGSGKALLVLRPE
ELGFLRYLKAAKVTLNEFEFSWNKVANIQTQLESLISKNYYLNKSAKEAYKCYLRAYDSH
SLKDIFDVTTMDLTAVSKSFGFSVPPFVDLPISNKPKVEIRSKLSGAGYRKKKQSFSFKT
KK
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgggcatcgatgtcaaaaagaaggtgctgaaacgaaaactgaaacaaatgaaggacggt
catgagaagaaaaaggccaaagaagtggtagaagagcaaccgatggaggacgatgatggt
gaaaaggtagaagatgaagaacaacaggctgaggagaatactggtaccaaggtttctgag
ttcttgacgaagacaactttcgcatcattggatggaaaagtaaactcaaatttgttgaag
tcggtgcaaagactgggcttcaccacattgactgaaattcaagccaaaacgatcgatccg
ttgcttgagggaaaagatgtgctagcctctgcgaagactggatcgggaaaaactctcgcg
tttctgcttcctgccattgaactccttcataaactgaactggaagcagcataatggaact
ggagtcatcatcgtctcgcctactcgcgagctttcgatgcaaacgtacggagtgttaacc
gagctcttggaaggttctaatttgacttttggactcgttatgggaggatcgaacagaagt
gcagaaaaagacaagctggctaaaggtgtttccatcttggtcgccactcctggacgtctt
ctcgaccatcttcaaaatgacaacttcctagttcgcaatttgaaatgtttgatcattgac
gaagctgatagaattctggatatcggattcgagattgagatgcaacaggttctccgtcat
ctgccaaaacaacgtcagtcgatgttgttctctgcaacacattctccaaaagttgacgaa
ttggtaaaattggctcttcattcaaatccagttcgtgtatcagtaaacgagaaagcagaa
gaagctactgtcgaaggattgcagcaaggatacattgtggctccttctgacaaacgtctt
ctccttttgttcacattcttgaagaaaaacaagactaagaaagtgatggtcttcttctcg
tcatgcaattcagtcaaattccatcatgagcttctcaactacattgacgttccgtgcatg
tctattcatggaaagcagaaacaacagaaacgtacttcaacattcttcacgttctgtcaa
gctgaaagtggaattctcctctgtaccgacgtcgctgctcgcggtctggacatcccagcg
gttgactggatcgttcagtacgatcctccagatgagccaagggaatacattcatcgcgtt
ggacgtacggcgcgtggaacaaatggaagtggaaaagcactgctcgttctgagaccggaa
gaacttggatttttgagatatttgaaagctgcgaaagttactttgaatgaattcgagttc
tcatggaacaaggtggccaacattcaaacacagctggagtctctcatcagtaaaaactat
tatctcaacaagtcggcaaaagaggcatacaagtgctatttgagagcgtatgattcccat
tcactgaaggacatcttcgatgtgactactatggacctaacagctgtttccaaatcattc
ggattctccgttcctccattcgtcgatcttccaatcagtaacaagccgaaggtggagatc
agatccaaactttccggggccggataccgcaagaagaagcagtcgttcagtttcaagacg
aagaaatga
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