Caenorhabditis briggsae (nematode): CBG_12500
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Entry
CBG_12500 CDS
T01054
Symbol
Cbr-cfim-1
Name
(RefSeq) Protein CBR-CFIM-1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CBG_12500 (Cbr-cfim-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_12500 (Cbr-cfim-1)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
CBG_12500 (Cbr-cfim-1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
8582022
NCBI-ProteinID:
XP_002640028
WormBase:
CBG12500
UniProt:
A0AAE9DVL4
A8XFW9
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Position
I:complement(<9245261..>9246094)
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AA seq
227 aa
AA seq
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MDDSWPKIDRTTIAASVPESPMNFDEKPPFNRTINVYPLTNYTFGTKDAQAEKDKSVPER
FKRMKDEYEVVGMRRSVEAVLIVHEHSLPHILLLQIGTTFYKLPGGELEIGEDEISGVTR
LLNDTLGRTDGESNEWTIEDEIGNWWRPNFDPPRYPYIPAHVTKPKEHTKLLLVQLPAKS
TFCVPKNFKLVAAPLFELYDNAAAYGPLISSLPTTLSRFNFIFNDSN
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagctggccaaaaatcgatcgaacaacaattgcagcatcagttccagagtct
ccgatgaattttgacgagaaaccgccgttcaacagaaccatcaacgtatatcctctcaca
aactatactttcggaacaaaagatgctcaagctgagaaggataaatccgttcctgaaagg
ttcaagagaatgaaagacgagtacgaagtggttggaatgcggcgttctgtggaagcagta
ttgatcgttcatgaacattcactcccacatattctgcttcttcaaataggaacaacattc
tataaattgcctggtggtgaattggaaatcggcgaagacgaaatttccggagttacacgt
ctcctgaacgatacacttggaagaacagacggagagtcaaatgagtggaccatcgaggat
gaaataggaaactggtggcgcccaaactttgatcctccacgttacccatatattcctgca
catgtgacgaaacccaaagaacacaccaaactattgcttgttcagctccctgcaaaatcc
acgttctgcgttccgaaaaatttcaagctggttgctgcaccattgtttgagctttatgac
aacgctgctgcatatggacccctgatttcatcgcttccaactacactttcgagattcaac
tttatcttcaatgactcgaactaa
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