KEGG   Caenorhabditis briggsae (nematode): CBG_13115
Entry
CBG_13115         CDS       T01054                                 
Symbol
Cbr-lsm-4
Name
(RefSeq) Protein CBR-LSM-4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03018  RNA degradation
cbr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CBG_13115 (Cbr-lsm-4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CBG_13115 (Cbr-lsm-4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_13115 (Cbr-lsm-4)
   03041 Spliceosome [BR:cbr03041]
    CBG_13115 (Cbr-lsm-4)
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CBG_13115 (Cbr-lsm-4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CBG_13115 (Cbr-lsm-4)
Spliceosome [BR:cbr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CBG_13115 (Cbr-lsm-4)
SSDB
Motif
Pfam: LSM GRP
Other DBs
NCBI-GeneID: 8588729
NCBI-ProteinID: XP_002646730
WormBase: CBG13115
UniProt: A0AAE9IU10 A8XH42
LinkDB
Position
II
AA seq 124 aa
MVLPLSLLKTAQNHPMLVELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEA
YVRGSTIKYLRIPETVVDLVKTEVNEVRRQQQREQSRGRGGGRGGRGGHRGGGGGNRGGR
GGAR
NT seq 375 nt   +upstreamnt  +downstreamnt
atggtgctgcctctttcacttctgaagaccgctcaaaatcatccgatgctcgtagagctg
aaaaatggagaaacctacaatggacatttgaaggcttgcgatgcatggatgaacattcac
ctcgttgatgtcattttcacatccaaggacggagacaaatttttcaaaatgtcagaagcc
tacgttcgtggttctactatcaagtatctcagaattccagaaacggtggttgatctcgtc
aaaacagaagtcaatgaagtccgtcgccagcaacaacgggagcaatcccgaggacgtggt
ggcggtcgaggcggtcgtggaggacaccgtggtggtggtggcggaaaccgaggcggacgt
ggaggtgctcgataa

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