Caenorhabditis briggsae (nematode): CBG_13115
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Entry
CBG_13115 CDS
T01054
Symbol
Cbr-lsm-4
Name
(RefSeq) Protein CBR-LSM-4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03018
RNA degradation
cbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CBG_13115 (Cbr-lsm-4)
09123 Folding, sorting and degradation
03018 RNA degradation
CBG_13115 (Cbr-lsm-4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_13115 (Cbr-lsm-4)
03041 Spliceosome [BR:
cbr03041
]
CBG_13115 (Cbr-lsm-4)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CBG_13115 (Cbr-lsm-4)
mRNA degradation factors
5'-3' decay
Lsm complex
CBG_13115 (Cbr-lsm-4)
Spliceosome [BR:
cbr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CBG_13115 (Cbr-lsm-4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
GRP
Motif
Other DBs
NCBI-GeneID:
8588729
NCBI-ProteinID:
XP_002646730
WormBase:
CBG13115
UniProt:
A0AAE9IU10
A8XH42
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All DBs
Position
II
Genome browser
AA seq
124 aa
AA seq
DB search
MVLPLSLLKTAQNHPMLVELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEA
YVRGSTIKYLRIPETVVDLVKTEVNEVRRQQQREQSRGRGGGRGGRGGHRGGGGGNRGGR
GGAR
NT seq
375 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgcctctttcacttctgaagaccgctcaaaatcatccgatgctcgtagagctg
aaaaatggagaaacctacaatggacatttgaaggcttgcgatgcatggatgaacattcac
ctcgttgatgtcattttcacatccaaggacggagacaaatttttcaaaatgtcagaagcc
tacgttcgtggttctactatcaagtatctcagaattccagaaacggtggttgatctcgtc
aaaacagaagtcaatgaagtccgtcgccagcaacaacgggagcaatcccgaggacgtggt
ggcggtcgaggcggtcgtggaggacaccgtggtggtggtggcggaaaccgaggcggacgt
ggaggtgctcgataa
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