KEGG   Caenorhabditis briggsae (nematode): CBG_13132
Entry
CBG_13132         CDS       T01054                                 
Symbol
Cbr-cul-4
Name
(RefSeq) Protein CBR-CUL-4
  KO
K10609  cullin 4
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03420  Nucleotide excision repair
cbr04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    CBG_13132 (Cbr-cul-4)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CBG_13132 (Cbr-cul-4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cbr04121]
    CBG_13132 (Cbr-cul-4)
   03400 DNA repair and recombination proteins [BR:cbr03400]
    CBG_13132 (Cbr-cul-4)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cbr04147]
    CBG_13132 (Cbr-cul-4)
Ubiquitin system [BR:cbr04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     CBG_13132 (Cbr-cul-4)
DNA repair and recombination proteins [BR:cbr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      CBG_13132 (Cbr-cul-4)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      CBG_13132 (Cbr-cul-4)
Exosome [BR:cbr04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   CBG_13132 (Cbr-cul-4)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 8588737
NCBI-ProteinID: XP_045095071
WormBase: CBG13132
LinkDB
Position
II:6012276..6015364
AA seq 867 aa
MTSGANQSNSADKSRSKQLRKSSKRPASSGGGTEAKQMRNAHDDQDECMEDVSTSSDTRE
HNGLLENFKNQPDHSQRAGASNDRGVKKKLVIKNFKGSSTRNGGTENGQSENVGESVEKD
WTVLADNVFAILEDRKTSSTMETLFSKVRAVCDRNQAKDLYDRLVTIVDNYAKHLRESLS
SVEQVPLLTDNCEQYLAKFGSIWESYPVKTVSLCLKGIYFFCFSEFDKEHFLISRPNRID
RNEVEILPLWETFMKIFKTTFFPEISKDFKATKLFSALYMAMQKMMDRHTVDSPLRTLIE
MLQTVHVGEEFSGFLLTQLREFYDRERTEKVPIMTCNEYMTYAEDQISRYSSMVKKNFDE
PTALRDVQSTMMTCLIQQAIPEILLHGFDALLSSTNTVDISRMFNLCRQCPGGEDEVRVQ
FSKYMKSRGEQIITTCPDNDLVSELLAFKKKIDFISKLGVIYSVEMYFFSVNGSFKSASD
STKMRQCVSDAFETFVNKNVDRAAELISKHFHTLLHSGNKHVTDDRSLDQMVDDAIVLFR
YLRGKDVFEAYYKRGLSKRLFLERSASVDAEKMVLCKLKTECGAGFTYKLEGMFKDMDAS
ETLAILFVKYLAHMNKPKVNFNARVITPEYWPTYEAYEINIPKEMRDTLTDFQDFYRLQH
GNRNVKWHHGLAAAVVSAEFREGCTKELVATMYQSVILLLFNKCETWTVAEIVECTKIPE
VEVVKNLVALIGGRDRPKILKMADVESSAKKDLLDSVKTGKFVVNSGFVDKRCRIRITQV
NIKTPVEEKNDVEQEVNQDRQCNIDAAVVRIMKARKELPHATLINEVLQQLKFPVKAADI
KKRIEGLIERDYISRDPDDATIYRYVA
NT seq 2604 nt   +upstreamnt  +downstreamnt
atgacatctggagcaaaccagtcgaattcggcagacaagagtagaagtaagcagcttcga
aaatcgtctaagcgcccagctagctccggtggtggcacagaagcgaaacaaatgcgtaac
gctcacgatgaccaagacgaatgcatggaggatgtatcaactagtagcgacaccagagaa
cacaacggtctactcgagaacttcaaaaaccagcccgatcattctcaacgcgctggtgcc
agcaatgatcgtggtgtgaagaaaaaactggtgatcaagaactttaaaggcagctcaacg
agaaacggtggtactgaaaacggccaaagcgaaaacgtaggagagagtgtcgagaaagat
tggacggtactggctgataatgtttttgccattctcgaagacagaaaaacatcgtccaca
atggaaacattgtttagtaaagttagagcagtttgcgatcgaaatcaagcaaaagatctt
tatgataggcttgttaccatagttgataactatgcaaagcatttgagggagtcactcagt
tccgtggagcaagttcctcttttgacggacaactgtgagcagtatttggcgaaatttgga
agtatttgggaatcgtatccagttaaaaccgtaagtttgtgtttaaaaggtatttatttt
ttttgtttttcagaatttgataaggaacattttcttatatctcgaccgaatcggattgac
aggaacgaagtggaaattctacctctatgggaaaccttcatgaaaatatttaaaaccaca
tttttcccggaaatttcaaaagatttcaaagcaaccaaactgttcagtgctctctatatg
gcaatgcagaagatgatggataggcatacagtggatagtccgttgagaacgttaatagaa
atgctgcagacagtacatgttggagaagaattctccggttttctattaactcaacttcgc
gagttctatgatcgggaaaggactgaaaaagtgcctattatgacgtgcaacgaatacatg
acctatgccgaagaccagatcagtagatattcgagtatggtgaaaaagaatttcgacgaa
ccgacggcgttaagagatgtccaatcaacaatgatgacttgtttgatccaacaagcaatt
cctgaaatattattgcatggctttgacgcacttctcagctccaccaacactgttgacatt
agccgaatgttcaatctatgccgtcagtgtccaggaggagaagacgaagttcgtgtgcag
ttctcaaagtacatgaagagtcgtggagaacagataataacaacttgtccggacaatgat
cttgtctctgagcttctggcattcaagaagaaaattgattttattagtaagttaggagta
atatattctgttgaaatgtattttttttcagtgaacgggagtttcaaatcagccagcgat
tcaacaaaaatgagacaatgtgtttctgatgcttttgaaacatttgtgaacaagaatgtt
gatagagcagcagagctgatttccaagcatttccataccctactccacagcggaaacaag
catgtcacagatgaccgttcattggatcaaatggttgatgatgcgattgttttattccga
tatctccgaggaaaagatgtattcgaggcgtactacaaacgaggcttgtcgaagagactt
ttccttgaaagaagtgcttctgttgatgctgagaaaatggttttgtgtaaactgaaaact
gaatgtggcgctggatttacatacaagttggaaggaatgttcaaagatatggatgcttcg
gaaactcttgctatattattcgtcaaataccttgctcacatgaacaaaccaaaagtcaat
tttaacgccagagtaatcactcccgaatattggcctacatacgaggcttatgaaatcaat
attccgaaagaaatgagagacaccctcacagattttcaagatttctaccgcctccagcac
ggaaatcgtaatgtaaaatggcatcatggacttgctgcagctgtggtttctgccgagttc
cgagagggatgtacgaaagaattggtggctacaatgtatcaatcagttatccttctcctc
ttcaacaaatgcgaaacatggacagtagctgaaatcgtggaatgtacgaaaattccagaa
gtggaagtcgtcaagaacttggttgcgctgatcggaggacgcgatagacctaagattctg
aaaatggccgatgtcgaaagttcggcgaagaaagatctactggattcggtaaaaaccgga
aagttcgttgtgaactctggattcgttgacaaacgttgtcgtattcgtatcacccaagtc
aacatcaagactccagtggaggagaagaacgacgtcgagcaggaggtcaatcaagatcgt
caatgtaatatcgatgctgccgttgttcgtatcatgaaggcgcgtaaggaattgccacac
gctactcttataaacgaagttctacagcaattaaaattcccagtcaaagcagcagatatc
aagaaacgtatcgaaggactcatcgagcgtgattacatctctcgtgatcctgatgatgcg
accatctaccgatatgttgcttga

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