KEGG   Caenorhabditis briggsae (nematode): CBG_13301
Entry
CBG_13301         CDS       T01054                                 
Symbol
Cbr-ntl-3
Name
(RefSeq) Protein CBR-NTL-3
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CBG_13301 (Cbr-ntl-3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_13301 (Cbr-ntl-3)
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CBG_13301 (Cbr-ntl-3)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     CBG_13301 (Cbr-ntl-3)
SSDB
Motif
Pfam: Not3 NOT2_3_5_C PaREP1
Other DBs
NCBI-GeneID: 8583424
NCBI-ProteinID: XP_045095116
WormBase: CBG13301
LinkDB
Position
III:complement(6305154..6311640)
AA seq 727 aa
MAEKRKLLAEIEKCFKKIDEGVELFEETMEKMHEANSDNQRDKYQDDLKKEIKKLQRLRD
QVKNWQNASEIKDKEKLNSYRKLIEQRMEQFKDVERENKTKPHSKLGLSAEEKLDPKEKE
KSDTMDWIQHQIRSLNEEVDRTEMQLESLATADVGKGKRGKKEDARAKNEREKRVESLKH
HLERINFHIEKLEICMRMVSNESLSAKKVYDTLKEAIEAYVEMMNEEDSEEADNYDPDDA
YDDLNLEKLCQQIGGVNMLSVDEDHSNGHELGIDTSESGGISPSWPTSCTTFNAFSACCN
TRTQEIGEQRFERRSAKDAACHARYGLANDRFSEPPISFSASTAPPPPGIPYNSVAAGRS
TTTPVPSTPVSANVPTPSAPSPIITGKSVPLSSAITNSTNEEEECVKQDVAPVATEKVSG
DSSPPAPLAVIEKSSSSTDSALLLASEEKKEQHMNSSGEEVPQKKDSIASTTSRGSIAAP
PSTASEPPESVNQPSTNVTTKAESTNGEATSVARSTPQQQQPPQSAIPTTASSMLGGMSS
DDPALQAALNMAAPQQPTASGPKRAHIPAWLGASPLGRTSMTKEFDLQLAALELACDKAT
FPLDSEKPRNYLTKMSFPVPSWYGQTAPSTADSLEYYLRLAPDTLFFIFYYMEGTRAQLL
AAKALKKLSWRFHTKYLTWFQRHEEPKQITDDYEQGTYVYFDFEKWSQRKKESFTFEYKF
LEDKDFD
NT seq 2184 nt   +upstreamnt  +downstreamnt
atggctgaaaaacgaaaactgttagccgaaattgaaaaatgtttcaaaaagatcgacgaa
ggcgtcgagcttttcgaagaaacaatggaaaaaatgcatgaggctaacagtgataatcag
cgagacaagtatcaagatgatttgaaaaaagaaatcaaaaagcttcagaggctcagagat
caagtgaaaaattggcagaatgctagcgaaatcaaggacaaggaaaagctgaattcgtac
aggaagctcattgagcagcgaatggagcaattcaaagatgtagaaagagagaacaagacg
aaaccacatagtaaactgggactttctgccgaggaaaagcttgatccaaaagaaaaggaa
aagtcagacacgatggactggattcaacatcagattcgctccttgaacgaagaagtggat
cgaacagaaatgcagttggagtccctggctaccgctgatgtcggaaaaggaaaacgcggg
aagaaggaagacgcacgagcgaaaaacgagagagaaaagcgagtcgaaagtctaaagcac
catttggaacgaataaactttcatattgaaaaattagagatttgcatgcgaatggttagt
aacgagagtttgagtgccaaaaaagtatacgacacattgaaagaagcgatcgaagcctat
gtggaaatgatgaatgaagaggactcggaagaggctgacaactacgatccggatgacgct
tacgatgatctcaatttggagaaactctgccaacaaatcggaggtgttaatatgctttct
gtggatgaggatcacagtaatggacatgaattgggcatcgacacatctgaatctggaggt
atctctcccagctggccgacgagttgcaccactttcaatgccttctccgcatgctgcaac
acccgaactcaagagattggcgagcaaagattcgaacgtcgatcggccaaagacgccgcc
tgtcacgccaggtacggcttggcaaatgatagattcagtgaacctccgatttccttttca
gcttctacagctccaccgccgccaggaataccgtataactcggttgcagcgggacgaagt
acaactactccagttccttcgacgcccgtgtcagccaatgtgccgacaccgtccgctcca
tctccaattattacaggaaaatcggttcccttgtcgtcagctatcacgaattctacgaac
gaggaggaagaatgtgtcaaacaggacgtggctcctgttgcgacagagaaggtttcggga
gattcttcgccgccggcacctctggcagtaatagaaaagtcttcgtcttctactgattct
gctctgttattagcttctgaagaaaagaaagaacaacacatgaattcttctggggaagag
gttccacaaaagaaggacagcattgcttcaacgacgtctcgtggatcgattgcagcgcca
ccttcgacagcttctgagccgccggagtctgtgaatcagccatctacgaatgtcacaacg
aaggctgagagtaccaatggggaggcaacgagtgtggcccggtcgacgccacagcagcag
cagccgccgcagtccgccattcctacaactgcatcgtccatgttgggtggaatgtcttct
gacgatccagcactgcaagctgcactcaacatggccgctccccaacaaccaaccgctagc
gggcccaaacgtgctcacattcctgcgtggctgggcgcatcgccactcggacgaacatcg
atgacgaaggaatttgacctgcagttggctgcgttggaattggcttgtgacaaggcgacg
ttcccgttggatagtgaaaaaccgagaaactatttgacgaagatgtcgttcccagtgcca
agttggtacgggcagactgcaccaagtacagcggacagtcttgagtactatcttcgcctg
gctccagatactctcttcttcattttttactacatggaaggaactcgtgctcagcttctt
gcggcgaaagctctcaaaaagctgtcgtggcgtttccacaccaagtatttgacttggttc
caaagacatgaggaacccaaacaaattactgacgattatgaacagggcacatacgtgtat
ttcgatttcgagaaatggtctcaacgcaaaaaggagtcgttcactttcgagtacaaattc
ctcgaggataaagactttgactga

DBGET integrated database retrieval system