Caenorhabditis briggsae (nematode): CBG_13313
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Entry
CBG_13313 CDS
T01054
Symbol
Cbr-npp-16
Name
(RefSeq) Protein CBR-NPP-16
KO
K14295
nuclear pore complex protein Nup50
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CBG_13313 (Cbr-npp-16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_13313 (Cbr-npp-16)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
CBG_13313 (Cbr-npp-16)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_FG
Ran_BP1
RES
Motif
Other DBs
NCBI-GeneID:
8583436
NCBI-ProteinID:
XP_045095119
WormBase:
CBG13313
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Position
III:<6351032..>6352890
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AA seq
571 aa
AA seq
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MTTAMEVPEAPLTSEQQMNVFRLRDKMTLLNAEFLKVLNGFFTEKSHYDFVSVTTFLTPS
EVRFQSVTMESYMKHVKELKTMYKVDDDAVAAVNSGRTDVRKTEVKRDDAGEKPHQRKIA
KAVRRNGNAGSAVRSTDSPKISNTTVFAASSPAAALSAPKFGDISVIAKDTPAPLSKSSE
PPAPAAGTARKRAIRGGGPLGGSESIIFKSGNESQASTSTVTIPTTNIKFPEPSKDFWTK
KDSSNTDGAALGNNDGSLFAFLGKDGDKSKEPSKFTGFSFGKKPESDTAKPDEPKTTVPL
FGSTTSAETTVPLFGSTTSKNENVKTTGSLFGAISKSPETTSAGLKSSDTPATTSKPLVF
GEQKDGDNAAAKPFSGLAFGASLFGSGAKQTTPSLSFGSGGTNTGSGGTTTTGSLFGGAT
TTGSLFGGFAGLAQKAQENQAKGEGGDDDEEYVPPKVETVEVEEPDAVISSKVAVFKFAD
KEYTKLGVGMLHVKDTDGKFSVLIRAATAIGTVWLNALCNKAMKATKVDDKGERIRLTCP
VSASEMTTLMIRFGSADVAKKFVEKVEEVSK
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgactactgcgatggaggttccagaggcaccgctcacttctgagcaacaaatgaacgtt
ttccgtcttcgtgataaaatgacgcttctgaatgcagagtttctcaaagttctcaatgga
ttcttcacagagaaaagccattatgattttgtaagcgttactacatttttgactccttct
gaagttcgttttcagagcgtaacgatggagtcatacatgaaacatgtgaaagaattgaaa
acaatgtacaaggttgacgatgatgcagtcgctgctgttaattcaggaagaacagatgtg
cgaaaaactgaagtgaaacgggacgatgctggagaaaaacctcaccagcgcaaaatagct
aaagctgtgcgtcgtaatggaaacgcgggaagtgctgttcgttctactgattcgccaaaa
atttcaaacaccacggttttcgcggcttcaagcccggcagctgcactgtccgcaccaaaa
tttggcgatatttccgtcatcgccaaggatacaccagcgcctctttcaaaatccagtgag
ccacctgcacctgctgctggaaccgctcgcaaacgtgcaattcgtggtggaggaccgctc
ggtggatctgaatccattattttcaagtcaggcaatgagtctcaggcttcaacttccact
gttacaatcccaacaactaacatcaagttcccagaacccagtaaagatttctggacaaaa
aaagattcgagcaacaccgatggagcagctttaggaaataatgatggatctctttttgct
ttcctgggcaaagacggtgataagtctaaagagccttcgaagttcactggattctcattt
ggcaaaaagccagaatccgacactgcaaagcctgatgagccaaaaaccactgtcccactg
tttggatctacaacatccgctgaaactactgtcccactatttggatctacaacatccaag
aatgagaacgttaagacaactggttcactttttggagctatttccaagtcaccagaaacc
acatctgcgggattgaagtcctcagatacgccagctactacttctaagccattggttttc
ggagagcaaaaagacggggacaatgccgcagcgaaaccattctctggacttgctttcggt
gcttctcttttcggatccggcgctaaacaaaccacgccatctttaagcttcggttctgga
ggtactaatactggatctggaggtaccacgactactggatcactgtttggaggtgctacc
actactggatcgttgtttggaggcttcgctggtttagcacagaaagcccaggagaatcag
gcgaaaggcgagggcggtgatgatgacgaagagtatgtgccgccgaaagtagaaacagtc
gaagttgaagagcctgatgcggtaatcagcagcaaagtcgctgtcttcaaatttgctgac
aaggaatacactaagcttggcgttggaatgcttcatgtcaaagacactgatgggaagttt
agtgtactcatcagagctgcgacggcgatcggcaccgtttggctgaacgctctttgtaac
aaggcaatgaaagcaacgaaggtcgatgataaaggagaacgaattcgtctcacttgtccg
gtttcggcatctgaaatgaccacactgatgattcgattcggctctgcagatgtcgctaag
aagttcgtggagaaggttgaagaagtctctaagtag
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