Caenorhabditis briggsae (nematode): CBG_13315
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Entry
CBG_13315 CDS
T01054
Name
(RefSeq) Protein CBG13315
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBG_13315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_13315
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CBG_13315
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CBG_13315
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
8583438
NCBI-ProteinID:
XP_045095120
WormBase:
CBG13315
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Position
III:complement(<6354264..>6355303)
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AA seq
315 aa
AA seq
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MASSSSGPPDIKIHNVFLSNVEEEFARIRGLVEDYPYVAMDTEFPGVVATPLGTFRSKED
FNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGDVWQFNFNFSFAEDMFSHDSVEMLRQA
GIDFNALQARYISFYKLPESFFQHEGIPTHVFGELLTTSGLITDPRITWLTFSSGYDFGY
LLKSITLGDLPKEEAMFFTCHKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKR
QGVRHQAGSDALLTAATFFKIKKQFFGDSWNQIAPLICGHMFGLGSSLSLFHSGGSQARL
GEDPNQGMGGIQQQA
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggcatctagtagcagtggtcccccagatatcaaaatccataatgttttcttatcaaat
gtggaagaagagttcgctcgaatccgtggattagttgaggattatccatatgtggccatg
gacacagagtttccgggagtggttgcgacgccattgggaacgttccgaagcaaagaagat
tttaattatcagcaagtgttctgtaatgtcaacatgctgaaattaatacaggttggattt
gccatggtcaacgacaaaggcgagctgcccccaacgggcgatgtttggcagttcaatttc
aatttctccttcgccgaagacatgttttcacatgacagtgttgaaatgctgcgtcaagcg
ggtattgatttcaacgcattgcaggcaagatacatttctttttataagttacccgaaagc
ttctttcagcatgagggaataccaacacatgtattcggcgagttgctgacaacatctgga
ctaattacggatccgcggattacatggctgacattctcctcgggctacgactttggatac
cttctgaaaagtataacgcttggcgatctgcccaaagaagaagctatgttcttcacatgt
cacaaaactctgttcccgaccagtttcgacatcaaaattcttctccgaacgccgaattgc
gcatcagcgaagctgaaaggtggtctgcaggaggttgctgaccagttggatgtaaaacga
caaggagttcgtcatcaggcaggatccgatgcacttttgacggctgcaacgtttttcaaa
atcaagaagcagtttttcggagatagctggaatcaaattgctcctctgatttgcggtcac
atgtttggacttggatcgtcactttccctcttccattccggtggttcacaagcccgactt
ggagaggatcccaatcaaggaatgggtggaattcagcaacaagcgtaa
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