Caenorhabditis briggsae (nematode): CBG_13421
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Entry
CBG_13421 CDS
T01054
Symbol
Cbr-apn-1
Name
(RefSeq) Protein CBR-APN-1
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CBG_13421 (Cbr-apn-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbr03400
]
CBG_13421 (Cbr-apn-1)
Enzymes [BR:
cbr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
CBG_13421 (Cbr-apn-1)
DNA repair and recombination proteins [BR:
cbr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
CBG_13421 (Cbr-apn-1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AP_endonuc_2
HpaB_N
Vfa1
Pox_Ag35
Motif
Other DBs
NCBI-GeneID:
8573043
NCBI-ProteinID:
XP_002630049
WormBase:
CBG13421
UniProt:
A8XHT2
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Position
II:complement(<2897100..>2899268)
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AA seq
389 aa
AA seq
DB search
MKKVTFGDDVMSPAPRKTKQEATPVKKKAKGKKRVQQHIQMTLKKMREEQEAEEAEENEN
VEKPECNCREEADEPAKKKRKKAAEGESEAQKKSRETIGAKVLEASQGSSKMLGFHVSAA
GGLEQAIYNARAEGCRSFAMFVRNQRTWNHKPMEESVVENWWKAVRETEFPLGQIVPHGS
YLMNAGSPEEEKLEKSRNAMVDECQRAEKLGITMYNFHPGSTVGKCEREKCMDTIAETID
YVVERTEKIVLVLETMAGQGNSIGGTFEELKYVIDRVKNKSRVGVCIDTCHIFAAGYDIR
SEKAYEEVMSKFEATIGWNYLKAMHINDSKGDLRSNLDRHEHIGQGKIGKDAFGFLMNDE
RLKGIPMILETPEGKYPEEMMMMYKMEKK
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagtgacattcggtgatgacgtaatgtcaccagcaccgaggaaaacgaagcaa
gaggcgacaccggtgaagaaaaaggcgaaaggaaagaaaagagttcagcaacacatacag
atgacgttgaagaagatgagagaagagcaagaagcagaagaagcggaagaaaatgagaac
gttgagaagcccgaatgcaactgccgagaagaggccgacgagccagctaagaagaaacga
aagaaagcagcagaaggcgaatcagaagcacagaagaagtctcgagaaacaatcggagca
aaagttctggaagcatctcaaggctccagtaaaatgctcggattccatgtaagcgctgct
ggtggtctagaacaagctatctacaatgcaagggcagagggatgtcgtagttttgcgatg
ttcgttcgaaatcaacgcacatggaatcacaaaccaatggaggagagtgtcgttgagaat
tggtggaaggcggttcgagaaacggaatttccgctgggtcaaattgtgccccatggatcg
tatctaatgaatgcgggatcgccggaagaggagaagctggagaagtcgaggaatgcgatg
gttgatgagtgtcagagagctgagaaactcggcattacgatgtacaattttcatccggga
tccacggttgggaagtgtgaaagggagaagtgtatggatacgattgccgagacaattgat
tatgtggtggagaggaccgagaagattgtgttagtgctggaaacaatggctggacaaggg
aattcaatcggtggaacatttgaagaactcaagtacgtcatcgatagagtcaagaacaag
tcccgggttggtgtctgcattgacacgtgtcacattttcgcggctggatatgatattcga
agtgaaaaggcatatgaggaggtcatgagtaaattcgaagcgaccattggctggaactat
ttgaaagccatgcatatcaacgattctaaaggagacctcagatcgaatctcgatcgccac
gaacacatcggccaggggaagattgggaaggatgcatttgggtttctgatgaacgatgag
aggttgaaggggattccgatgattctggagacgcctgaaggaaaatatccggaggagatg
atgatgatgtacaaaatggagaagaaatga
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