Caenorhabditis briggsae (nematode): CBG_14959
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Entry
CBG_14959 CDS
T01054
Symbol
Cbr-msh-6
Name
(RefSeq) Protein CBR-MSH-6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CBG_14959 (Cbr-msh-6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbr03400
]
CBG_14959 (Cbr-msh-6)
DNA repair and recombination proteins [BR:
cbr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
CBG_14959 (Cbr-msh-6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_I
MutS_III
MutS_IV
MutS_II
Pilin_PilX
AAA_29
Motif
Other DBs
NCBI-GeneID:
8581132
NCBI-ProteinID:
XP_045095579
WormBase:
CBG14959
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All DBs
Position
I:3696676..3700614
Genome browser
AA seq
1194 aa
AA seq
DB search
MSKRQSSLMSFFTKTPKSEKLETENEKKKEPIVNAKEKVEEKKVLKRTNSQTVSSPVKTP
RTATKRARVVLSSSEGEDDDDEDFEMKDAEAAQESSEESEGDENASDDCEVTYESTPQTT
PKNTPKRNKKLTTTIFVLQKVLSETPKSVKSSAIGKVRRVIPEGEEVSMAVVEEKIEKIM
EGELERKKNVDKGGSKKKQQEEEEPTERFDHESLDWLKPDKIRDASKRAMSDPEYDPKTL
WVPPDFHLKQTPGHRQWWTIKSQHFDTIILFKVGKFYETYHMDAVEVVRALNIAFMRGSY
AHAGFPEHAASKFADQLMNHGYKVARVEQTETPQMLEERNQKAKSKDKVVRREVCRVTSN
GTRTYGVLDGVDLGSATSTLDPTAKHLLAIKEFHNTETGKSTYGVCMIDTTTAHIRVGQF
EDDDYRSQLRTLFANVIVVQTLVERSSMSVSTKSIINGILFSVPIEHLLPKKQFLTAEDC
VRDLSKDDYFGSEVSGWPDVLKLMLDDSSVLPKPSSKWQLAFSAFGAIVWYLRDSLIDVD
MISMRNITLYDSNNSKPEKINQEDDKVDWKGKHLILDGTVLENLNIVPNGRDSHLTSLYY
VLNKCSTPFGRRLLRSWLLQPTCDPATLRLRQEAIKWMISSDAESFFSTAIATLKKIPDL
DRLLQKIHTIGLKYRSEKHPDSRAIFFDTIKTNQKKIGELLAAIDGFKLCNKLRKEYQTV
QQEGEGCELLDELLGNEQQVEEVDENIFYFEKMFDRTTALKDGKIVPNAGCDDEYDQATA
KVKEALSELNAYKDKIAKKYSCSIKFVDSGKVKYLLEMPENTKVSSDFELKSRRKGFIRY
STPDSEELVAFLDIAEKEKSKLGDDATRRVFEQFGHKNPIWLETVQLVSKFDVLTSLATF
SKSSPFDMTMPEFDFESAKPYLIVEKGLHPCLALQSRNEVTQTTSFIANSTTMGQTEAAV
MLLTGPNMGGKSTLMRQTAVLAILAHMGCMVPAFSMRLTPIDRIFTRIGANDRIMCGEST
FFIELKETDIMLKNATKHSLLLVDELGRGTSTFDGTAIASAVLQKIANDLVCRTFFSTHY
HSICDSFTNHPNIRLAHMVSLVFSTQTSEYSFRNPTMEDVTFLYELESGICPKSYGFYAA
KLAGIDQKVVRVAYAESNKFASNLIIDPKIRHLVECARDDSFDVTKLKQMIEAI
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgacaaagttctctgatgtcgttttttacgaaaactccaaaatcggagaag
ctagagacggaaaatgagaagaagaaggagcctattgtaaatgctaaggaaaaagtggaa
gaaaaaaaagttctgaaaagaaccaactcacaaacagtaagttctccagtaaaaactcca
cgaactgctacaaaacgtgcccgagttgtgctgtcgtcatcggaaggtgaagacgatgac
gatgaagacttcgagatgaaagatgccgaagcagctcaagaatcttcagaagagtcggag
ggcgacgaaaacgcaagtgacgattgtgaggttacttatgaaagtactcctcaaaccact
cctaagaacactccgaaaagaaataagaaattaacaacaacgatttttgttttgcagaaa
gttctctctgaaactccgaaaagtgtaaaatcatctgcaatcggaaaggttagaagagtg
attcctgagggcgaagaagtttcgatggcagtagtcgaggagaaaattgaaaaaatcatg
gagggagaattggagagaaagaaaaatgttgataaagggggctcgaagaagaaacagcaa
gaagaagaagaaccaacggaaagattcgatcatgaatctctcgactggctcaaaccagac
aagattcgtgatgcgagcaaacgtgctatgtccgatcccgagtatgacccgaaaacattg
tgggttcctccagattttcatttgaaacaaacacctggacatcgtcaatggtggactatc
aaatcccaacacttcgataccatcattcttttcaaagttggaaaattctatgaaacctat
cacatggatgccgtcgaagtcgttcgcgcgttgaacattgctttcatgagaggatcatat
gctcatgctggttttccagaacacgcagcttccaagtttgcagaccagcttatgaatcat
ggctacaaagttgcacgcgtagaacaaacggaaactccccagatgcttgaagaacgaaac
caaaaggcaaaatctaaggacaaggtagtgaggagagaagtgtgcagagtaacttcgaat
ggaaccagaacgtacggtgtgcttgatggagttgatttgggtagtgcaacatccacgctc
gatcctactgctaaacatttactggccatcaaagagtttcataacactgaaacgggaaag
tctacttacggagtctgcatgattgacacaactactgctcatattagagttggccagttc
gaagacgatgactatcgttctcaacttcgtaccctctttgcaaacgtcattgttgtgcag
actctcgttgagagaagctccatgtccgtctccaccaaatcaatcattaatggaattctg
ttctcggttccaattgaacatttgctccccaagaaacaatttttgaccgcggaagactgt
gttagagatctttcaaaggatgattattttggatcagaagtttctggatggccagatgtt
ctcaaattgatgcttgatgattcgagtgttctaccgaagccgtcttctaagtggcaactc
gctttttccgctttcggtgcaattgtgtggtatcttcgagacagtttgatcgatgttgac
atgatctccatgcgaaacattacgctatatgattccaataattctaagcctgaaaaaata
aatcaggaagatgataaagtggactggaaaggaaaacatctcattctcgatggcacagtt
ctcgaaaacttgaacatcgtacctaatggcagagactctcatttgacatccctgtattat
gttctcaacaaatgttctaccccattcggtcgccgccttcttcgctcatggcttctacaa
ccaacatgtgatccagccacactccgtctgcgtcaggaagctatcaagtggatgatttct
tcagatgcagaatcattcttttcaacagctatcgctactcttaagaaaattccagatttg
gaccgactacttcaaaaaatccacacaatcggactcaagtaccgttctgagaagcacccg
gacagtcgtgcgattttcttcgatactatcaaaactaatcagaaaaagattggagagtta
ttggcagcgattgatggattcaaactttgtaacaaacttcgaaaggaataccagacggtg
caacaagaaggtgaaggatgtgaacttctggatgagctcctcggaaatgagcagcaagtg
gaggaagttgatgagaacattttttatttcgagaaaatgtttgatcgcacaactgctctc
aaggacggaaaaattgttccaaatgcgggatgcgatgatgaatacgatcaagccacagcg
aaagtcaaagaagcattgagcgaattgaacgcttataaggataaaattgcaaagaagtat
agttgttcgattaaatttgtggactcaggaaaagtgaaatatttgctggagatgcccgaa
aacacgaaagtgtcatccgatttcgagctgaaatcgagaaggaagggtttcattcgttat
tcaacacccgactcggaggaacttgtcgcttttcttgatatcgctgagaaagaaaaatcc
aaattgggagacgatgctactcgacgcgtcttcgagcagtttggccataaaaatccgatt
tggcttgaaacggtgcaattggtttcgaagttcgatgttctcacttctttggctacattt
tcaaaatcttctcccttcgatatgaccatgccagagttcgatttcgaatcagcaaagcct
tacttgatcgttgaaaaaggacttcatccatgtcttgcattgcaatcaagaaatgaagtt
acgcaaacaacttcatttattgctaacagcactacaatgggccagactgaagccgctgtt
atgcttctcaccggtccaaacatgggtggaaagtcgacacttatgagacagactgctgtt
cttgccattcttgcccacatgggatgcatggtgcctgcattttcaatgcgtttaactcca
attgatcgtattttcactcgcatcggagccaatgatcgtattatgtgtggagagtcgaca
ttctttattgagttgaaagagactgatattatgctgaaaaatgcaaccaagcactctctt
ttgctagtggatgaacttggacgtggaaccagcacttttgatggaactgcaatcgcatct
gctgttcttcagaagattgcgaatgaccttgtctgtcgaacatttttctccactcattat
cattcgatttgtgactcgttcactaatcatcctaacattcgattggctcatatggtaagt
ctcgtattcagtacccaaacatctgaatattctttcagaaaccctactatggaagacgta
actttcctctacgaattggaatctggaatctgtccaaagtcgtatggtttctacgctgcc
aagctcgcaggaatcgatcaaaaagttgttcgagttgcttatgctgaaagcaacaaattc
gcatctaatcttattattgaccccaagattcgccatttggttgaatgtgctcgtgacgac
agtttcgatgttaccaagttgaagcagatgatcgaggctatctaa
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