Caenorhabditis briggsae (nematode): CBG_16004
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Entry
CBG_16004 CDS
T01054
Symbol
Cbr-csb-1
Name
(RefSeq) Protein CBR-CSB-1
KO
K10841
DNA excision repair protein ERCC-6
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CBG_16004 (Cbr-csb-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cbr03036
]
CBG_16004 (Cbr-csb-1)
03400 DNA repair and recombination proteins [BR:
cbr03400
]
CBG_16004 (Cbr-csb-1)
Chromosome and associated proteins [BR:
cbr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
CBG_16004 (Cbr-csb-1)
DNA repair and recombination proteins [BR:
cbr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
CBG_16004 (Cbr-csb-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
8585385
NCBI-ProteinID:
XP_002643391
WormBase:
CBG16004
UniProt:
A8XNA8
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All DBs
Position
X:complement(2579831..2584039)
Genome browser
AA seq
1015 aa
AA seq
DB search
MGNIDDFSSVDWGEDGGEFLDESMQSSTHRSGRNPSPPVRNRSSQSQAATPSPKLPGIRE
QLRIIRDAAAHGEIIDFDDNQVRLEPPPCHRAPRPLPPPVVAANIRNEEYNHEEALKTAL
GSDCEDDSDEESVSNEPSRSPSPSASGDENQEYKVEDDPEFAIADEDEMEDEEEDIPARR
GSSEGNRSPRGSRHRRRAIRDDNSNENFFKRYNSLPVDDEDYTITRNVESESGLSSLPWK
VDTKSWNRLFPFQKDGVQWLQTKMDHRSGGILADEMGLGKTIQTCIFLRSIAETQRTSYK
YKGLDTCLIVCPVSVTHQWVEKLNEWFPRVRVFLLHQTSSTGRERNWADRILKKLGKKSR
YYPDGAVVLTTYGTFTNLHKRIVPLPWQVVILDEGHHIRNDDTKCAEAMRQLTTTQRFIL
TGTPFQNRLKEFWKLIDFVNPGRLSDAKTFDKCFIRIINAGAYINCSPEAAAKAYQCLMA
LHCAIKPLILRRLQKDHRMELNLTDIEEVMISCELSPRQRRIYQEFCGSIEVQQILERNI
KAFGGINKLGDICNHPGIYRKMKPGTEKFGRMHDSGKVVMLFRLFRRWFKNPNNRVVLFT
QRLAVVDMLAFYLDKKQIAYCTLTGNNSLPERTRIIKRFEEDLSIKVFLMTTRTGGLGLN
LASANKAVIFDPDWNPQADNQAKMRIYRMGQQHKVTIVRLVSNGSIEDRKYFKQIQKENL
AEQLLNNADVNHTIPNNTLKDLFTLKPAGLKGSDIGVYIEGDIVPEEGLKSSNKDLKKKA
KKDLKHKLEGFEDKKLLLSLFDDDKLVAMRNHARTVQDGACLRAPERKRINEAVESAVKS
LLHSEGRLAHGWKKEFHRHLRHSGLKRIKSEYNVEEEKIDGSFWDSITPRFKCNDDKKEL
DKIVMCARLLHDFLQKCPDGKEEKFLKKILAKQLDFTDPTQTFFFREIISTIAIYNEDTD
CWTLKKMYQEARIKRKDAVNTSEDHSPPRSKKHRRSMEDSSNQPSTSTQAYQTDN
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgggtaatatcgatgatttttcgtcggttgattggggtgaagacggtggagaatttctg
gatgaatctatgcaatcttctacgcatcggtccggcagaaatccgtcaccgccagtcaga
aaccgtagtagtcagagccaagctgctactccgtctcctaagcttcccggtattcgtgag
cagttgagaatcatacgagatgcagctgctcatggtgaaataattgattttgatgataat
caagtcagattagagccaccaccttgtcaccgtgctccgcgaccgcttccccctccagta
gttgctgcaaatatcagaaatgaggagtacaatcatgaagaagcgttaaaaactgctctt
ggaagcgactgtgaagacgactcggatgaggagagcgtgagcaatgagccatcacgctca
ccctcgccatcagccagcggagacgaaaatcaggagtacaaagtggaagacgatccggaa
ttcgccattgcggacgaggacgagatggaggatgaagaggaggatataccagctcgccgt
ggatcttcagaaggcaatcgttctcccagaggctcacgtcatcgccgacgagctattcga
gacgacaacagtaatgaaaactttttcaaaagatataacagtcttccggtggacgatgaa
gactacactatcaccaggaacgtcgagtctgagagcggcttgtccagtcttccttggaaa
gtagacaccaaatcctggaatagacttttcccattccaaaaagatggcgttcaatggctc
caaacaaagatggaccatcgtagtggtgggattcttgccgatgagatgggtctcggaaag
acgatccagacttgcatttttctgagatcaattgcagaaactcagcgcacctcttataaa
tacaaaggtctggatacctgcctcattgtgtgccccgtctctgtcacccatcaatgggtc
gaaaagcttaatgagtggttcccaagagtgagagtcttcctcctccatcaaacaagctct
actggacgtgagaggaactgggctgataggattctgaaaaagctgggaaagaagtccaga
tactatccggacggagctgtggtgctcacgacatatgggactttcacaaatctccacaaa
cgtattgtcccgcttccctggcaggtcgtcattctcgatgaagggcatcatattcggaac
gacgacacgaaatgcgccgaagcgatgcgacagctgacgactacgcagagattcattctc
actggaactcctttccaaaatcggctgaaggaattttggaagctcatcgattttgtgaat
ccaggaagactttccgatgcgaagaccttcgataaatgtttcataaggatcatcaacgcg
ggcgcctacatcaattgctcaccggaagctgctgccaaggcttaccaatgcttgatggct
ctccattgcgccatcaaaccactgatcctccgtcgtcttcagaaggatcaccgaatggag
ttgaatctcactgacatcgaagaagtgatgatcagctgtgaactaagtccgagacaacgg
cgaatctaccaagagttttgcggatccatcgaagttcagcagattcttgaaaggaatata
aaagcattcggtggaatcaataagcttggcgacatttgtaatcatcccggaatctatcgg
aaaatgaaaccaggaaccgagaaatttggaagaatgcatgattccgggaaagtcgttatg
ctcttcaggctcttccggagatggttcaagaacccgaacaatcgcgttgtgttgttcact
caacgtttggcagtggtggatatgttggcattctacttggataagaagcaaattgcctac
tgcacgttaactgggaacaactctcttccggaacgcacaaggatcatcaagcgctttgaa
gaggatctgagcatcaaagtattcttgatgacgacgcgcaccggaggactagggctgaat
ctcgcttcagccaacaaagctgtaatttttgatccggattggaacccgcaagctgacaac
caggcaaagatgaggatctatcgaatgggacagcagcacaaggtcactatcgtccggctg
gtttcgaatggatcgattgaagaccgaaagtatttcaagcagatccagaaagagaatctt
gctgaacagcttctgaacaacgccgatgtgaaccacacgatccccaacaacacgctgaag
gatctgttcaccctgaaacccgcaggattgaaagggtcggacattggagtctatatcgaa
ggagacatcgtcccagaggagggtttaaagtccagcaacaaggatctcaaaaagaaagcg
aagaaggatctgaagcacaagcttgaaggcttcgaggacaagaagctgctcctatcactg
tttgatgatgacaaattggtggcgatgaggaaccacgcgaggacggttcaagatggagct
tgcctccgtgctccagaaaggaaacgaattaatgaagctgtggagagcgccgttaaaagc
cttctgcattcggaaggaagactggctcatggctggaagaaggaattccataggcatctc
cggcacagtggcttgaagcggatcaagagcgagtacaatgtggaggaggagaaaatcgat
gggtcattttgggactccataacacctcgattcaagtgtaacgacgataagaaagagctt
gataaaatagtcatgtgtgctcgcctacttcatgatttcctgcagaaatgccccgatggg
aaggaggagaaattcctcaaaaaaatcctcgctaagcagctggacttcacggatccaacc
caaacttttttcttccgcgagatcatttccactatcgcaatttacaacgaagacactgat
tgttggacgttgaagaaaatgtatcaagaagcgagaatcaagagaaaggatgctgttaac
acctcggaagatcattcgcctcctagatccaagaaacataggagatcgatggaagattcg
tcaaaccaaccatcgacatctacccaagcttaccagacggacaattaa
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integrated database retrieval system
