KEGG   Caenorhabditis briggsae (nematode): CBG_16554
Entry
CBG_16554         CDS       T01054                                 
Symbol
Cbr-lim-8
Name
(RefSeq) Protein CBR-LIM-8
  KO
K06084  F-box protein 20
Organism
cbr  Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cbr04121]
    CBG_16554 (Cbr-lim-8)
Ubiquitin system [BR:cbr04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     CBG_16554 (Cbr-lim-8)
SSDB
Motif
Pfam: PDZ_6 LIM PDZ_2 PDZ DUF6288 zf-BED YqeC DUF3394
Other DBs
NCBI-GeneID: 8583866
NCBI-ProteinID: XP_002641872
WormBase: CBG16554
UniProt: A8XPG8 A0AAE9DCE6
LinkDB
Position
III:complement(7644071..7652523)
AA seq 1011 aa
MPTVSVEKPLSVIPPEFCANANCPFSPKEISVLRIKVRGGVTKEEILEVNSASRPALPRQ
HSASTVSPLQSSSDELNNDSGIDNRTVGSPSTSEFSPRSTDLFVSPKSLIDEEPPHHPPP
PPPVEEKLDQVLIPLKLSRSQDYAPIYRSLEKDTYYDQCPSESDKDEELTTNSRSYVESS
RLLEKNQYMPVTNARVEATFKQPPPREGVKPFVSRAAQENNDFESRTENIDLTVELNREQ
KATVTATKYPRSDFIMEDHHRPQAQTHAPPPMKSSSTTRIYHAVDIPFDESPAAYYPKQN
NDYPRQRRYSASSISKQDGMFTLNVVMGSQPVHKGMGFSTFKRENRVIVESVIVGSPADK
AGLLVGDTILSINGEDMSDKYQSGVTRILHEAARVGEADILILRAPAPAPMLTKQMSTSS
SNSSNFDKARSVFTENKSFDSYAEFKRKHSRASRDSNSSGATRSSRDFNSLPRGTTAQSS
LDRKRDTSLSSYRTAKDNFDSNRSSARSEYGDYRVTSYQEKNAPGRLTDFVPEVDRRLSR
REQSEEIYSKTQREEEPRTIRNYHLSNENIARTNLNFDGRRGSEEESTTTTLKRSTLPRS
GTTQWKNEYSDGEEVVEKLPVTSRDPSPLRSALKKSSHNYYHQESDPSPRPPPPRRFYST
ESLIPNQKTSYQRYSEEEDEEIEESYTSMRRHRQQQPRYSDEFHTVGSYGVFPQRSRSQQ
PTSRLPRYDDVPDDVDFDDVSGVSHRFYDRSGNHVRAPRERTYDIQIQRDYGGSRSTPRD
LDFVRNTYKWEEQQEDTKVTTTTKIYEKESRDWRDVINQQRQAAPGNSVDRRGIATTSAS
LSNLPTYINRRMEKEREREREYLRDREYSMPPVEPPIITEKYERDEYSRVEERTYPVPVA
RNNMRREETQMQSQSQSQSQTSQSQSQSQSQDAVVAVSGKHRCAHCNEELGRGAAMIVES
LNLFYHLACFKCYVCKTSLGSGATGADVRVRDGRLHCQTCYSNDRVQLSKV
NT seq 3036 nt   +upstreamnt  +downstreamnt
atgccaactgtatcagtggagaaaccattgagtgtgattccaccggaattctgtgcaaat
gcaaattgtcctttcagtccaaaggagatttctgttttacgaatcaaggttcgcggtggt
gtgaccaaagaagaaattcttgaagtgaattccgcttcacgaccagctcttccgcgtcaa
cactcggcatctacagtatccccattgcaaagttccagtgacgaattaaataacgattct
ggaatcgacaatcgaacagttggatcaccatcaacgtcggaattctcgccgagaagtacc
gatctattcgtctcaccaaaaagtctcatcgacgaagaaccccctcatcatccacctcca
cctcctccagtcgaagaaaagctagatcaagtactgattcctctgaaactgtcgcgcagt
caagactacgctccaatctatcgtagcctcgaaaaagacacctattatgatcagtgccca
tctgaaagtgacaaagacgaggaattgacgacaaactccagaagctacgtggaaagctct
cgtttactagaaaagaatcaatacatgccggtaacaaatgctcgtgttgaggccactttc
aaacagccaccaccaagagaaggggtgaaacctttcgtatcaagagctgctcaagagaac
aatgatttcgaatcgagaactgagaatattgacttgacggtggagttgaatagagaacag
aaggcaactgtcacagctaccaagtatccaagaagtgattttattatggaggatcaccac
cgaccacaagcccaaacgcatgctcctccaccaatgaaatcttcctcaaccaccagaatc
tatcatgctgttgatattccatttgatgaatctccagcagcttactatccaaaacaaaac
aatgattacccaagacaacggagatacagtgcaagttcaatttcgaaacaagatggaatg
ttcactttgaacgttgtcatgggatcccaaccagtgcacaaaggaatgggattcagcact
tttaaaagagaaaatcgagttattgtggagagcgtgattgttgggtcaccagctgataag
gccggccttttggtcggtgacactatactctcaatcaacggagaagatatgtcagataaa
tatcaatctggagtgaccagaattcttcacgaagctgcccgtgttggagaagccgatatt
cttattttgagagctcctgctccagctccaatgctcacaaaacaaatgtcaacttcatct
tcaaactcgagtaatttcgacaaagcccgctctgtgttcactgagaacaaatcgtttgac
tcgtatgcagaattcaagaggaaacatagtcgagcttctcgtgactccaattcatccgga
gcaacaagatcctctagggatttcaacagtttgccacgtggaaccactgctcagtcatca
cttgatcgtaaaagagacacatcgctgtcgagctaccgtaccgccaaagacaactttgat
tcgaatagaagcagtgcaagaagcgagtatggagattacagagtaacgagttaccaagaa
aagaatgcgcctggtcgtttgactgacttcgtccctgaagtcgatcgtcgtttgagtaga
agagaacaatcggaagagatttattcaaaaactcagagagaagaagaaccaagaaccatt
cgaaactatcatctgagcaatgagaatattgctcgaaccaatctgaactttgacggtcgc
cgtggctctgaagaagaatccacaacgactacactaaaacgatccacgttgccaagaagt
ggtacaacacagtggaaaaacgagtattctgatggagaagaagttgttgaaaagttaccg
gtgacatcacgagatccatcaccattaagaagtgctctcaaaaagtcatctcacaactac
tatcaccaggaatccgatccatcaccacgaccaccaccaccacgaagattctattcaact
gaatctctgattccaaatcaaaagacatcttatcagagatattctgaagaggaagacgaa
gaaatagaggagagctacacgtcaatgagacgccatcgccaacaacagccacggtattcc
gacgagttccataccgtcggatcctatggcgtttttcctcaaagatccagaagtcaacaa
ccaacatcacgtcttccaagatatgatgatgtgcctgatgacgttgactttgacgatgtc
agtggagtctcacatcgtttctacgatcgttccgggaaccatgttcgggctccgcgagag
cgcacctatgatattcagattcagagagactacggtggtagtagatcgactcctcgggat
ttggatttcgtgaggaacacgtacaagtgggaggagcagcaagaggatacaaaagtgact
acgacaaccaagatttatgaaaaagaatctcgtgactggcgtgacgtcatcaaccaacaa
cgccaggcagctcctggaaattccgttgatcgacgaggaattgctacaacgtcagcttcc
ctcagcaatctcccaacctatatcaatcgccgaatggagaaggaacgcgagagagaacgt
gaatatttgagagaccgagagtacagtatgcctccagtggaaccaccaattatcactgaa
aagtacgaaagagatgagtacagtcgagtcgaggagagaacatatccagtgccagtggca
agaaataacatgagaagagaagagacgcagatgcaatctcagagccagtctcagagccaa
acttcgcaaagtcaatcgcaaagccaatcgcaggatgctgtggtagctgttagtggaaaa
catagatgtgcacactgcaatgaagagctcggtcgtggtgctgcaatgattgttgaaagc
ctcaatctcttctaccatctcgcctgcttcaaatgttatgtttgcaaaacttctcttgga
tccggagctaccggggccgatgttcgtgtccgtgacggacgcctccactgtcaaacctgc
tacagtaacgatcgtgtgcaactgagcaaagtctaa

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