Caenorhabditis briggsae (nematode): CBG_16554
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Entry
CBG_16554 CDS
T01054
Symbol
Cbr-lim-8
Name
(RefSeq) Protein CBR-LIM-8
KO
K06084
F-box protein 20
Organism
cbr
Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cbr04121
]
CBG_16554 (Cbr-lim-8)
Ubiquitin system [BR:
cbr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
CBG_16554 (Cbr-lim-8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ_6
LIM
PDZ_2
PDZ
DUF6288
zf-BED
YqeC
DUF3394
Motif
Other DBs
NCBI-GeneID:
8583866
NCBI-ProteinID:
XP_002641872
WormBase:
CBG16554
UniProt:
A8XPG8
A0AAE9DCE6
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Position
III:complement(7644071..7652523)
Genome browser
AA seq
1011 aa
AA seq
DB search
MPTVSVEKPLSVIPPEFCANANCPFSPKEISVLRIKVRGGVTKEEILEVNSASRPALPRQ
HSASTVSPLQSSSDELNNDSGIDNRTVGSPSTSEFSPRSTDLFVSPKSLIDEEPPHHPPP
PPPVEEKLDQVLIPLKLSRSQDYAPIYRSLEKDTYYDQCPSESDKDEELTTNSRSYVESS
RLLEKNQYMPVTNARVEATFKQPPPREGVKPFVSRAAQENNDFESRTENIDLTVELNREQ
KATVTATKYPRSDFIMEDHHRPQAQTHAPPPMKSSSTTRIYHAVDIPFDESPAAYYPKQN
NDYPRQRRYSASSISKQDGMFTLNVVMGSQPVHKGMGFSTFKRENRVIVESVIVGSPADK
AGLLVGDTILSINGEDMSDKYQSGVTRILHEAARVGEADILILRAPAPAPMLTKQMSTSS
SNSSNFDKARSVFTENKSFDSYAEFKRKHSRASRDSNSSGATRSSRDFNSLPRGTTAQSS
LDRKRDTSLSSYRTAKDNFDSNRSSARSEYGDYRVTSYQEKNAPGRLTDFVPEVDRRLSR
REQSEEIYSKTQREEEPRTIRNYHLSNENIARTNLNFDGRRGSEEESTTTTLKRSTLPRS
GTTQWKNEYSDGEEVVEKLPVTSRDPSPLRSALKKSSHNYYHQESDPSPRPPPPRRFYST
ESLIPNQKTSYQRYSEEEDEEIEESYTSMRRHRQQQPRYSDEFHTVGSYGVFPQRSRSQQ
PTSRLPRYDDVPDDVDFDDVSGVSHRFYDRSGNHVRAPRERTYDIQIQRDYGGSRSTPRD
LDFVRNTYKWEEQQEDTKVTTTTKIYEKESRDWRDVINQQRQAAPGNSVDRRGIATTSAS
LSNLPTYINRRMEKEREREREYLRDREYSMPPVEPPIITEKYERDEYSRVEERTYPVPVA
RNNMRREETQMQSQSQSQSQTSQSQSQSQSQDAVVAVSGKHRCAHCNEELGRGAAMIVES
LNLFYHLACFKCYVCKTSLGSGATGADVRVRDGRLHCQTCYSNDRVQLSKV
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgccaactgtatcagtggagaaaccattgagtgtgattccaccggaattctgtgcaaat
gcaaattgtcctttcagtccaaaggagatttctgttttacgaatcaaggttcgcggtggt
gtgaccaaagaagaaattcttgaagtgaattccgcttcacgaccagctcttccgcgtcaa
cactcggcatctacagtatccccattgcaaagttccagtgacgaattaaataacgattct
ggaatcgacaatcgaacagttggatcaccatcaacgtcggaattctcgccgagaagtacc
gatctattcgtctcaccaaaaagtctcatcgacgaagaaccccctcatcatccacctcca
cctcctccagtcgaagaaaagctagatcaagtactgattcctctgaaactgtcgcgcagt
caagactacgctccaatctatcgtagcctcgaaaaagacacctattatgatcagtgccca
tctgaaagtgacaaagacgaggaattgacgacaaactccagaagctacgtggaaagctct
cgtttactagaaaagaatcaatacatgccggtaacaaatgctcgtgttgaggccactttc
aaacagccaccaccaagagaaggggtgaaacctttcgtatcaagagctgctcaagagaac
aatgatttcgaatcgagaactgagaatattgacttgacggtggagttgaatagagaacag
aaggcaactgtcacagctaccaagtatccaagaagtgattttattatggaggatcaccac
cgaccacaagcccaaacgcatgctcctccaccaatgaaatcttcctcaaccaccagaatc
tatcatgctgttgatattccatttgatgaatctccagcagcttactatccaaaacaaaac
aatgattacccaagacaacggagatacagtgcaagttcaatttcgaaacaagatggaatg
ttcactttgaacgttgtcatgggatcccaaccagtgcacaaaggaatgggattcagcact
tttaaaagagaaaatcgagttattgtggagagcgtgattgttgggtcaccagctgataag
gccggccttttggtcggtgacactatactctcaatcaacggagaagatatgtcagataaa
tatcaatctggagtgaccagaattcttcacgaagctgcccgtgttggagaagccgatatt
cttattttgagagctcctgctccagctccaatgctcacaaaacaaatgtcaacttcatct
tcaaactcgagtaatttcgacaaagcccgctctgtgttcactgagaacaaatcgtttgac
tcgtatgcagaattcaagaggaaacatagtcgagcttctcgtgactccaattcatccgga
gcaacaagatcctctagggatttcaacagtttgccacgtggaaccactgctcagtcatca
cttgatcgtaaaagagacacatcgctgtcgagctaccgtaccgccaaagacaactttgat
tcgaatagaagcagtgcaagaagcgagtatggagattacagagtaacgagttaccaagaa
aagaatgcgcctggtcgtttgactgacttcgtccctgaagtcgatcgtcgtttgagtaga
agagaacaatcggaagagatttattcaaaaactcagagagaagaagaaccaagaaccatt
cgaaactatcatctgagcaatgagaatattgctcgaaccaatctgaactttgacggtcgc
cgtggctctgaagaagaatccacaacgactacactaaaacgatccacgttgccaagaagt
ggtacaacacagtggaaaaacgagtattctgatggagaagaagttgttgaaaagttaccg
gtgacatcacgagatccatcaccattaagaagtgctctcaaaaagtcatctcacaactac
tatcaccaggaatccgatccatcaccacgaccaccaccaccacgaagattctattcaact
gaatctctgattccaaatcaaaagacatcttatcagagatattctgaagaggaagacgaa
gaaatagaggagagctacacgtcaatgagacgccatcgccaacaacagccacggtattcc
gacgagttccataccgtcggatcctatggcgtttttcctcaaagatccagaagtcaacaa
ccaacatcacgtcttccaagatatgatgatgtgcctgatgacgttgactttgacgatgtc
agtggagtctcacatcgtttctacgatcgttccgggaaccatgttcgggctccgcgagag
cgcacctatgatattcagattcagagagactacggtggtagtagatcgactcctcgggat
ttggatttcgtgaggaacacgtacaagtgggaggagcagcaagaggatacaaaagtgact
acgacaaccaagatttatgaaaaagaatctcgtgactggcgtgacgtcatcaaccaacaa
cgccaggcagctcctggaaattccgttgatcgacgaggaattgctacaacgtcagcttcc
ctcagcaatctcccaacctatatcaatcgccgaatggagaaggaacgcgagagagaacgt
gaatatttgagagaccgagagtacagtatgcctccagtggaaccaccaattatcactgaa
aagtacgaaagagatgagtacagtcgagtcgaggagagaacatatccagtgccagtggca
agaaataacatgagaagagaagagacgcagatgcaatctcagagccagtctcagagccaa
acttcgcaaagtcaatcgcaaagccaatcgcaggatgctgtggtagctgttagtggaaaa
catagatgtgcacactgcaatgaagagctcggtcgtggtgctgcaatgattgttgaaagc
ctcaatctcttctaccatctcgcctgcttcaaatgttatgtttgcaaaacttctcttgga
tccggagctaccggggccgatgttcgtgtccgtgacggacgcctccactgtcaaacctgc
tacagtaacgatcgtgtgcaactgagcaaagtctaa
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