Caenorhabditis briggsae (nematode): CBG_18001
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Entry
CBG_18001 CDS
T01054
Symbol
Cbr-emb-5
Name
(RefSeq) Protein CBR-EMB-5
KO
K11292
transcription elongation factor SPT6
Organism
cbr
Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbr03021
]
CBG_18001 (Cbr-emb-5)
03036 Chromosome and associated proteins [BR:
cbr03036
]
CBG_18001 (Cbr-emb-5)
Transcription machinery [BR:
cbr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
CBG_18001 (Cbr-emb-5)
Chromosome and associated proteins [BR:
cbr03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
CBG_18001 (Cbr-emb-5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
S1
Tex_central_region
SPT6_acidic
HHH_9
Tex_YqgF
HHH_3
SH2
Tex_N
Motif
Other DBs
NCBI-GeneID:
8584057
NCBI-ProteinID:
XP_002642063
WormBase:
CBG18001
UniProt:
Q93148
A0AAE9DBN8
LinkDB
All DBs
Position
III:complement(7126285..7131368)
Genome browser
AA seq
1521 aa
AA seq
DB search
MDFIDNQAEESDASTDRSDDDEPQSKKMKMAKDKLKKKKKVVASSDEDEDDEDDEEEGRK
EMQGFIADEDDEEEDARSEKSDRSRRSEINDELDDEDLDLIDENLDRQGERKKNRVRLGD
SSDEDEPIRRSNQDDDDLQSERGSDDGDKRRGHGGRGGGGYDSDSDRSEDDFIEDDGDAP
RRHRKRHRGDEHIPEGAEDDARDVFGVEDFNFDEFYDDDDGEEGLEDEEEEIIEDDGEGG
EIKIRRKRDTTKKTTLLESIEPSELERGFLSAADKKIMIEDAPERFQLRRTPVTEADDDE
LEREAQWIMKFAFEETTVTNQAAVDADGKLECLMNIDSSEIEDKRRAVVNAIKAVLHFIR
VRSNSFEVPFIGFYRKESIDNLLTMNNLWIVYDYDEKYCHLSEKKRRLYDLMRRMREYQE
LSDDITAKRRPINEMDLIDINFAETLEQLTDIHANFQLLYGSLLEDMTKWEKERRAADGE
ETEYRAKFKSSIRNDKYQMCVENGIGELAGRFGLTAKQFAENLDWRKHDIDQDSAFPLEA
AEEYICPAFIDRETVLNGAKFMLAKEISRQPLVRSRVRQEFRDNAHFWVKPTKKGRDTID
ETHPLFNKRYIKNKPIRNLTDEEFLYYHKAKQDGLIDMVLMYESDEDQAANQFLVKKFLS
DSIFRKDEYTDNVEQWNAVRDQCVNMAITEMLVPYMKEEVYNTILEEAKMAVAKKCKKEF
ASRIARSGYVPEKEKLDEEDEEHSARRRMMAICYSPVRDEASFGVMVDENGAIVDYLRMV
HFTKRGHGGGNTGALKEESMELFKKFVQRRRPHAIALNIEDMECTRLKRDLEEAVAELYS
QSKIFSQINVYLMDNELAKVYMRSNISIAENPDHPPTLRQAVSLARQLLDPIPEYAHLWN
SDEDIFCLSLHPLQRDIDQEILAQLLNHELVNRVNEEGVDINKCAEFPHYTNMLQFTCGL
GPRKATSLLKSIKANDNLIESRSKLVVGCKLGPKVFMNCAGFIRIDTRRVSDKTDAYVEV
LDGSRVHPETYEWARKMAVDALEVDDSADPTAALQEIMETPERLRDLDLDAFADELNRQG
FGEKKATLYDISSELSERYKDLRAPFVEPSGEALYDLLTRSGKEVKVGCKMLGTVQSVQY
RKVERDTIDSMIPEHTEEDQYICPSCKIFTAADPQSVREHLLNAGRPGGCVGSACGIRVR
LDNGMTAFCPNKFISSSHVDNPLTRVKLNQPYWFKVMAINKEKFSILLSCKSSDLKEDAP
AERDDFWDQQQYDDDVAAMKKETTKKKDADTRVKRVIAHPNFHNVSYEAATKMLDEMDWS
DCIIRPSANKESGLSVTWKICDRIYHNFFVKESAKDQVFSIGRTLSVGGEDFEDLDELIA
RFVLPMIQISHEITTHKYFFTQGTSEDTDQVETFVHEKRRELGRSPYVFSASYRQPCQFC
ISYMFDNSNRIRHEHFKISPRGIRFRQQNFDSLDRMMAWFKRHFNEPPPGIRSSLSYRPT
GRTGPPPSAPYQQPPQQQYYR
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatcgacaatcaagcggaagaatctgatgcctccacagatcgctccgacgat
gacgagccacaatcaaagaaaatgaaaatggcgaaggataaattgaagaagaaaaagaaa
gttgttgcgagttctgatgaagacgaagacgatgaagacgacgaagaggaaggtcgtaaa
gagatgcaaggtttcatcgctgatgaagacgacgaggaagaagacgctagatctgaaaaa
tctgatcgttcaagacgttcagaaatcaatgatgaactggatgacgaagatttggatttg
atcgatgaaaatttggatcgtcaaggagagcggaagaaaaatcgtgttagactgggtgat
tctagtgacgaagatgaacctataagaagaagtaaccaagatgacgatgatcttcagtcg
gagagaggaagtgacgacggcgataaaagacgcggccatggaggaagaggtggaggcggt
tatgattctgactccgacagaagtgaagatgatttcatcgaagacgacggagatgctcct
cgaagacatcgaaaacgtcatcgtggggatgaacatattccagaaggagctgaagacgat
gcccgagatgtattcggagtcgaagatttcaactttgacgaattctatgatgacgatgat
ggagaagaaggattggaagacgaagaagaggaaatcattgaggacgacggagaaggtgga
gagattaaaattcgtagaaagagagataccacaaagaaaacaactcttctcgaatctatt
gagccaagtgaactcgagcgcggatttctgtcagctgctgacaagaaaatcatgattgag
gatgctccagagagattccagttgagacgaacaccagtcacagaagcggatgacgatgag
ttggaacgcgaagcacaatggatcatgaaattcgcattcgaggagactacagttaccaat
caagcagcagttgatgctgatggcaaactcgaatgtttgatgaacattgattcttctgaa
atagaggataaaagaagagcggttgttaatgcaatcaaagcagttcttcattttattcga
gtacgatccaattcatttgaagtcccgtttattggtttctatcgaaaggaatctatcgat
aaccttctcacaatgaacaacctctggattgtttacgactatgatgaaaaatattgtcac
ttgtcggagaaaaaacgaaggctctatgatttgatgcgtcgtatgagggaatatcaggag
ctgagtgacgatatcactgcaaaacgccgaccaatcaacgaaatggatctaattgatatc
aactttgcggaaacactcgagcagttgactgatattcatgcgaatttccaactactctat
ggaagtctacttgaagatatgactaaatgggagaaagaacgccgtgctgccgatggggag
gagacggaatatcgagcgaagtttaagtcaagcatccgcaacgacaaatatcaaatgtgc
gtggaaaatggaattggagaactagctggaagattcggtttgactgctaagcagttcgca
gaaaatcttgattggcggaaacacgatattgaccaagattcggcatttccattggaagcg
gctgaagaatacatctgccctgcgtttatagacagggaaaccgtccttaacggtgccaag
ttcatgttggcaaaagaaatcagtcggcagcctttagttcgaagccgtgttcgtcaagaa
ttccgtgataatgctcacttctgggtgaaaccaactaaaaaaggaagagacaccatcgat
gagactcatccactgtttaataagcgatacatcaagaacaagcctattcgaaatctcaca
gatgaggaattcctttattatcataaagctaaacaagacggtctcattgatatggtcttg
atgtatgagtccgatgaagaccaggcagcaaaccaattcctagtgaaaaagttcctcagt
gattcgattttccgcaaagatgagtacactgacaatgtcgagcagtggaacgcagtgaga
gatcaatgcgtgaacatggcaatcacagagatgcttgtaccatacatgaaagaagaagtt
tacaacacaatcctcgaagaagcgaaaatggcggttgctaaaaaatgcaaaaaagaattc
gcttcgagaatcgctagatctggatatgtgccggagaaagagaaattggacgaagaagat
gaggaacacagtgctcgtcgacgtatgatggcaatctgttattcgcctgttcgagatgaa
gcatcgtttggagtaatggttgatgaaaacggagcgattgtcgattatcttcgcatggtt
cacttcacaaaaaggggtcatggcggtggaaacactggtgctctgaaagaagaatcgatg
gaattgttcaagaagttcgtgcaaagacgtcgtccgcatgctattgctcttaatattgaa
gacatggagtgcactagattaaagagagatttggaggaagcggtcgctgagctttattcg
caatccaagattttctcccaaatcaatgtgtatttgatggacaatgaacttgcgaaagta
tatatgagatccaatatatcgattgcggagaatcccgaccacccaccaactctccgtcag
gctgtctcgcttgctcgtcagcttcttgatcctatcccagaatacgcacatttgtggaat
agtgatgaagatattttctgtctgtctctccacccacttcaaagagatatcgatcaagaa
attctagctcaattactcaatcatgagctagtcaatagagtcaacgaagaaggcgtggat
attaacaaatgtgccgagttccctcactacaccaacatgcttcagtttacctgtggatta
ggtccacgcaaggcaacatcacttctgaaaagcatcaaagcgaacgataacttgattgaa
agcagatcgaaacttgtcgtaggatgcaaactcggcccgaaagtgttcatgaactgtgct
ggattcattcggattgatacacgcagagtatcagataaaaccgatgcatatgtggaagtt
ctcgatggatctagagtgcatccggaaacttacgaatgggcgagaaaaatggcagtggat
gctctagaagttgatgattccgctgatcccactgctgctcttcaagagattatggaaaca
cctgaacgactgagagatcttgatttggatgctttcgccgatgagctcaatcgacaaggt
ttcggtgagaagaaggcaacattgtacgacatatctagtgagctgagtgaaagatataaa
gatcttcgcgcacctttcgtagagccttctggtgaagctctttatgatctacttacacgt
agcggaaaagaggttaaggttggatgcaaaatgttgggaactgtccagtcagtccagtac
cgtaaagtggagagggataccattgacagtatgatacccgaacatacggaagaggatcaa
tacatatgtccttcctgcaaaatattcacagcagctgatccacaatctgttcgggaacat
ctattaaacgcagggcgccctggtggatgcgtaggatcagcttgtggaatccgtgtacgg
ttggacaatggaatgactgctttctgtccgaacaagtttatttcgtcaagccatgtagac
aatcctttgactcgagtcaaactcaatcaaccctactggtttaaagtgatggcaatcaac
aaagaaaagttttcaattttactaagctgtaagagtagtgatctgaaagaagacgcccca
gccgaacgtgacgatttctgggatcaacaacagtatgatgatgatgttgctgcgatgaag
aaggagacgacgaaaaagaaagatgcagatactcgagtgaaaagagttattgctcacccg
aatttccacaatgtttcttatgaagccgctactaagatgcttgatgagatggactggtct
gattgtatcattcgtccttctgctaacaaagaatctggactctcggtcacttggaaaatt
tgcgaccgtatctatcataactttttcgtcaaggaatcggcaaaagatcaagttttctca
attggacgtacactttccgttggtggggaagatttcgaagatttagacgaactgattgcc
cgattcgtactccccatgattcaaatttcccatgaaattacaactcacaaatacttcttc
acacaaggaactagtgaggatacagatcaagttgaaacttttgtacacgagaaacgccga
gaattgggacgatcgccgtatgtcttcagtgcatcatacaggcaaccatgccaattctgc
atctcttatatgttcgacaattccaatcgaatccgtcatgaacatttcaaaatctcgcca
agaggaatccggttccgtcaacagaatttcgactcactggataggatgatggcttggttc
aaacgtcattttaacgagccaccgccaggaatacgaagttctctttcgtaccgtcccacc
ggacgtactggacctcctccatctgctccataccagcaaccaccacaacaacaatactat
cgttga
DBGET
integrated database retrieval system
