KEGG   Caenorhabditis briggsae (nematode): CBG_18075
Entry
CBG_18075         CDS       T01054                                 
Symbol
Cbr-snfc-5
Name
(RefSeq) Protein CBR-SNFC-5
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03082  ATP-dependent chromatin remodeling
cbr03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    CBG_18075 (Cbr-snfc-5)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    CBG_18075 (Cbr-snfc-5)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:cbr01009]
    CBG_18075 (Cbr-snfc-5)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbr03021]
    CBG_18075 (Cbr-snfc-5)
   03036 Chromosome and associated proteins [BR:cbr03036]
    CBG_18075 (Cbr-snfc-5)
Protein phosphatases and associated proteins [BR:cbr01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     CBG_18075 (Cbr-snfc-5)
Transcription machinery [BR:cbr03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     CBG_18075 (Cbr-snfc-5)
    SWI/SNF complex
     CBG_18075 (Cbr-snfc-5)
Chromosome and associated proteins [BR:cbr03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    CBG_18075 (Cbr-snfc-5)
   PBAF complex
    CBG_18075 (Cbr-snfc-5)
   SWI/SNF complex
    CBG_18075 (Cbr-snfc-5)
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd
Other DBs
NCBI-GeneID: 8584123
NCBI-ProteinID: XP_002642128
WormBase: CBG18075
LinkDB
Position
III:6830056..6831203
AA seq 313 aa
MSNAFLHTNIMLLRAQEVDELLDGSEEKYRAAGAVPSTPRVEGGVSRTAAKTPAAGWAGQ
QVTSGSHHLESVPCSCPIAHSRGRMKHRELVYSAEDLEMSKRVMENAEEGEDLVPIRLDM
ELDGIKLRDTFCFNRNEKLITPEMVAEIMCEDLDLPLAVFQPAITAAINQQLEASTEAPP
LDPNICDQRAVLKLNINVGNQSLVDQFEWDMSDPNNSPEEFSRNICKELGLGGEFMSGIA
YSIRGQLQWNQRTYAFSESPLATVDCPFRTATEVESWGPFLETLTDAEIEKKMRDQDRNT
RRMRRLVGGGFNY
NT seq 942 nt   +upstreamnt  +downstreamnt
atgtccaatgcttttcttcatactaatatcatgcttctgagagctcaagaagttgacgaa
ctcttggatggatcagaagaaaaatatagagctgccggtgctgttccatccaccccacga
gttgaaggaggtgtatctcgtactgctgccaagactcctgctgccggatgggcagggcaa
caagttactagtggttcccatcatcttgaatccgttccatgctcttgcccaatagcacat
tctcgtggtcgcatgaagcatcgcgaattggtttactcggctgaagatttggaaatgtcg
aaaagagtgatggaaaacgccgaggaaggagaagatcttgttccaattcgcctggatatg
gagttggatggaatcaagctacgtgatacattctgctttaatcggaacgagaagctgatc
actccggagatggtcgcagagattatgtgtgaggacttggatcttccgttggcagtcttc
cagccagcaattactgctgcgatcaatcagcagctcgaagcttccaccgaagctcctcca
ctcgatccgaatatttgtgaccagcgagctgttttgaaactgaacatcaacgttggaaat
cagagtcttgtcgaccaattcgaatgggatatgtctgatccaaacaatagccccgaagag
ttctccagaaatatttgcaaagaactgggtcttggaggtgaattcatgtctggaatcgcg
tattcgattcgaggtcagttgcaatggaatcaaagaacctatgcgttctcggaaagtcct
ttagcgacagttgattgcccattcagaaccgcaactgaagtcgaatcatggggaccgttc
ctcgagactttgacagatgctgagattgaaaagaaaatgcgagatcaagacagaaacacc
agaagaatgcgtcgtctcgtcggaggcggtttcaattattaa

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