Caenorhabditis briggsae (nematode): CBG_18075
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Entry
CBG_18075 CDS
T01054
Symbol
Cbr-snfc-5
Name
(RefSeq) Protein CBR-SNFC-5
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03082
ATP-dependent chromatin remodeling
cbr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
CBG_18075 (Cbr-snfc-5)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
CBG_18075 (Cbr-snfc-5)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cbr01009
]
CBG_18075 (Cbr-snfc-5)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbr03021
]
CBG_18075 (Cbr-snfc-5)
03036 Chromosome and associated proteins [BR:
cbr03036
]
CBG_18075 (Cbr-snfc-5)
Protein phosphatases and associated proteins [BR:
cbr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
CBG_18075 (Cbr-snfc-5)
Transcription machinery [BR:
cbr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
CBG_18075 (Cbr-snfc-5)
SWI/SNF complex
CBG_18075 (Cbr-snfc-5)
Chromosome and associated proteins [BR:
cbr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
CBG_18075 (Cbr-snfc-5)
PBAF complex
CBG_18075 (Cbr-snfc-5)
SWI/SNF complex
CBG_18075 (Cbr-snfc-5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
Motif
Other DBs
NCBI-GeneID:
8584123
NCBI-ProteinID:
XP_002642128
WormBase:
CBG18075
LinkDB
All DBs
Position
III:6830056..6831203
Genome browser
AA seq
313 aa
AA seq
DB search
MSNAFLHTNIMLLRAQEVDELLDGSEEKYRAAGAVPSTPRVEGGVSRTAAKTPAAGWAGQ
QVTSGSHHLESVPCSCPIAHSRGRMKHRELVYSAEDLEMSKRVMENAEEGEDLVPIRLDM
ELDGIKLRDTFCFNRNEKLITPEMVAEIMCEDLDLPLAVFQPAITAAINQQLEASTEAPP
LDPNICDQRAVLKLNINVGNQSLVDQFEWDMSDPNNSPEEFSRNICKELGLGGEFMSGIA
YSIRGQLQWNQRTYAFSESPLATVDCPFRTATEVESWGPFLETLTDAEIEKKMRDQDRNT
RRMRRLVGGGFNY
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatgcttttcttcatactaatatcatgcttctgagagctcaagaagttgacgaa
ctcttggatggatcagaagaaaaatatagagctgccggtgctgttccatccaccccacga
gttgaaggaggtgtatctcgtactgctgccaagactcctgctgccggatgggcagggcaa
caagttactagtggttcccatcatcttgaatccgttccatgctcttgcccaatagcacat
tctcgtggtcgcatgaagcatcgcgaattggtttactcggctgaagatttggaaatgtcg
aaaagagtgatggaaaacgccgaggaaggagaagatcttgttccaattcgcctggatatg
gagttggatggaatcaagctacgtgatacattctgctttaatcggaacgagaagctgatc
actccggagatggtcgcagagattatgtgtgaggacttggatcttccgttggcagtcttc
cagccagcaattactgctgcgatcaatcagcagctcgaagcttccaccgaagctcctcca
ctcgatccgaatatttgtgaccagcgagctgttttgaaactgaacatcaacgttggaaat
cagagtcttgtcgaccaattcgaatgggatatgtctgatccaaacaatagccccgaagag
ttctccagaaatatttgcaaagaactgggtcttggaggtgaattcatgtctggaatcgcg
tattcgattcgaggtcagttgcaatggaatcaaagaacctatgcgttctcggaaagtcct
ttagcgacagttgattgcccattcagaaccgcaactgaagtcgaatcatggggaccgttc
ctcgagactttgacagatgctgagattgaaaagaaaatgcgagatcaagacagaaacacc
agaagaatgcgtcgtctcgtcggaggcggtttcaattattaa
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integrated database retrieval system