Caenorhabditis briggsae (nematode): CBG_18197 Help Entry CBG_18197         CDS       T01054                                  Symbol Cbr-rpb-2 Name (RefSeq) Protein CBR-RPB-2   KO K03010   DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Organism cbr  Caenorhabditis briggsae (nematode) Pathway cbr03020   RNA polymerase cbr03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:cbr00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     CBG_18197 (Cbr-rpb-2)   09124 Replication and repair    03420 Nucleotide excision repair     CBG_18197 (Cbr-rpb-2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:cbr03021]     CBG_18197 (Cbr-rpb-2)    03400 DNA repair and recombination proteins [BR:cbr03400]     CBG_18197 (Cbr-rpb-2) Enzymes [BR:cbr01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      CBG_18197 (Cbr-rpb-2) Transcription machinery [BR:cbr03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      CBG_18197 (Cbr-rpb-2) DNA repair and recombination proteins [BR:cbr03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       CBG_18197 (Cbr-rpb-2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5 DUF5817 DUF5816 Zn_ribbon_IS1595 Motif Other DBs NCBI-GeneID:  8584219 NCBI-ProteinID:  XP_045096412 WormBase:  CBG18197 LinkDB All DBs Position III:complement(5695864..5699901) Genome browser AA seq 1215 aa AA seqDB search MNYNNKMAFDEDDGMQDDGNDEEYSDETAEISPDAWQEACWVVISAYFDEKVNFGFFLIK TICMFQGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGNDMENPAKFSLKFNQI YLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDESVNEKVYEKVFVGKV PVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKD GKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIV FRALGFVSDRDILGHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTR EQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKR LDLAGPLLAFLFRALFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTITRGLAYSLATGN WGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPA ETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGA WVGIHREPELLMDTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVEKQK LALRKRHIDLLKDVDETKKYTWSDLVGNGVVELIDSMEEETSMIAMMPEDLRSGGYCDTY THCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYY PQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRS YRDNEANIDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVAL PDIDDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGD KFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANK GEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKH MVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDP YHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMV KPQGPKRSAKQHSEA NT seq 3648 nt NT seq  +upstreamnt  +downstreamnt atgaactacaataataaaatggcgtttgacgaggatgacggtatgcaagatgatggaaac gacgaagagtattcggatgagacggccgaaatcagtccggatgcgtggcaagaagcatgc tgggttgtgatcagtgcttacttcgatgagaaggtaaacttcggattctttctgatcaaa actatttgcatgtttcagggtctcgtgcgacagcagcttgattcctttgacgaattcgtt caaatgaacgtacaaagaatcgttgaagattctccaccagtcgaacttcaatcggaaaac cagcatcttggcaacgacatggaaaatcccgccaaattctctttgaaattcaaccaaatc tatctatcaaaaccaactcactgggaaaaagatggagctccaatgccaatgatgccaaac gaagcacgtctccgtaatctaacatacgcatcaccactttacgtcgatatcaccaaagta gtgacgcgagacgaatcagtgaacgagaaggtctacgagaaagtattcgtcggaaaagtt ccagttatgctccgatccagttattgcatgttatcgaacatgacagatcgtgatctaaca gagcttaacgaatgtccacttgatcctggaggttattttgttatcaacggttcggaaaaa gtgcttatcgctcaagagaaaatggctacaaatacagtttacgtattctcaatgaaagac ggaaagtatgcgttcaaaactgagtgccggtcttgtttggaaaattcgtcccgtccgaca tctacaatgtgggttaacatgctcgctaggggaggtggaggaggaaagaagacggcaatg ggacagcgaatcatcggtattttgccttatatcaaacaagaaatccctatcatgattgtc ttccgtgctttgggattcgtttcggatcgtgatattctgggccatattatctatgacttc gaagacccagaaatgatggaaatggtcaagccttctttggacgaagcatttgttattcag gaacaaaatgttgctcttaatttcatcggagctcgtggtgccaaaccaggagtcactaga gaacagagaattaagtacgctcgagaaattcttcagaaggaattattgcctcacgttgga gtttccgaacattgcgaaactaagaaagcgtttttcatcggatatatggtgcacagactt cttttggccgcacttggtcgtcgtgaactcgatgatcgtgatcatattggaaacaaaaga cttgacttagctggacctctgcttgctttccttttccgtgcgcttttccggaatttgttg aaagagatgagaatgacggctcaaaagtatatcaacaagaacgacgatttcgctctcgat gtttgtgtcaaaacttctaccatcactcgtggactcgcctattctttggctaccggaaac tggggagatcagaagaaagcccatcagtctcgcgctggtgtctctcaagtactcaatcgg ctcacctacactgctacgctttctcatttgcgtcgtgcgaactctcccatcggtcgtgaa ggaaagcttgctaaacctcgtcaattgcacaacactcaatggggaatggtctgtcctgct gagactccagaaggacaggctgtcggcttggtgaaaaatctcgcactcatggcctatatt tctgttggttctcttcccgaaccgattttggaattcttggaggaatggtctatggaaaat ctcgaagaagtatctccatctgcaatcgcggacgctacaaagatctttgtgaatggtgca tgggtgggaatccatcgtgaacctgagcttttgatggatacattgaaaaaattacgtcgt caaatggatattatcgtttccgaagtatcgatggttcgcgacatccgagaccgagaaatt cgaatctatacagatgctggaagagtttgtcgtccactgctcatcgttgagaagcaaaaa ctagcattgagaaaaagacacatagatctgttgaaagatgtagatgaaacgaagaagtac acatggtctgatctggtgggtaatggagtagtagaactgattgattcgatggaagaagaa acatcaatgatcgccatgatgccagaagatttgagaagtggtggatattgtgatacgtac actcattgtgaaatccatccagctatgattcttggtgtgtgcgcatcaatcattccattc ccggatcacaatcaatctcctcgtaacacctaccagagcgctatgggtaaacaagctatg ggagtttacacaacaaacttccatgttcgaatggacacactcgcacacgttctctactat cctcagaagccacttgtcacaaccagatcaatggaatatctgagattcaacgaacttcct gctggaatcaacgctatcgttgcaatcctctcttattctggatacaatcaggaagattcc gtcattatgaacaactcggctatcgacagaggactcttccgctccgttttctatcgttca taccgtgataacgaagcaaacattgacaacgccaacgaagaactcatcgagaaaccaact cgcgagaagtgttctggcatgagacattctctgtacgataaactcgacgaagacggaatc atctcaccgggaatgcgtgtttctggagatgatgtgattatcggaaagactgttgctctg ccagatattgacgatgatttggatgcgaccggaaagaaatacccgaagagagatgcttcc acatttttgagaagttcagagactggaattgtcgatcaggttatgctctcgctcaacaac gatggtaacaagttcgtgaaaattcgaatgcgttcagtccgacttccacaaattggagac aagtttgcctctcgtcacggacagaagggtactatgggaatcatgtatcgccaggaagat atgcctttcactgctgaaggtcttactccggacatcatcattaatcctcacgcagttcca tctcgtatgacaattggtcacttgatcgaatgcttacagggtaagctttcggctaacaaa ggagaaattggtgatgcaacaccgttcaatgacacagttaacgtacaaaagatctctgga cttctttgtgagtacggctatcatctccgtggtaacgaagtgatgtacaacggccatact ggaaagaagttgacaactcaaatcttcttcggtccaacatactatcaacgtctcaagcat atggtcgacgacaagattcactcgcgtgcacgtggtccaattcagatgatgaaccgtcaa cctatggaaggaagagctcgtgatggaggtcttcgtttcggagagatggagcgcgattgt caaatttcccacggagccactcaattccttcgagaacgtctcttcgaagtttctgatcca taccacgtgtatgtgtgtaacaactgcggtctgatcgtcgtcgctaacttgagaacgaac agtttcgagtgcaaggcttgtcgtaacaaaacacaagtgtcagcagttcgtattccttat gcttgcaagctgctcttccaagaactgatgtcaatgtcgattgctccgaggcttatggtg aagccacaggggcccaagcgatccgcaaagcaacactcagaagcctga

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