Caenorhabditis briggsae (nematode): CBG_18198
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Entry
CBG_18198 CDS
T01054
Symbol
Cbr-ntl-9
Name
(RefSeq) Protein CBR-NTL-9
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBG_18198 (Cbr-ntl-9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_18198 (Cbr-ntl-9)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CBG_18198 (Cbr-ntl-9)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
8584220
NCBI-ProteinID:
XP_002642224
WormBase:
CBG18198
UniProt:
A8XS51
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Position
III:complement(<5694350..>5695469)
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AA seq
314 aa
AA seq
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MIDARASPATLAQQAAVPSSTNLAINTDEIMQWIIDLRDPSKREFALLELSKKRDSVPDL
PLWLWHSFGTMSALLQEVVAIYPAIMPANLTAAQSNRVCNALALMQCVASHRETRGPFLH
AHIPLYLYPFLHTTKVSRSFEYLRLTSLGVIGALVKTDDKEQLLVVINFLLSTEIIPLCL
RIMEQGTELSKTVATFILQKILLDDTGLLYICQTYERFSHVAMILGKMVMKLTREPSVRL
LKHVVRCYSRLSDNPSLTLDARVAQGGAGQNVKVRAQQALKQCLPDQLKDLTFKNCLKED
PSTMNWLRQLLTNL
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgatagacgcacgtgcttcaccggctactctagctcaacaagccgccgtaccatcttcg
accaacttagccattaatacggatgagatcatgcaatggattatcgatctgcgggatcct
tccaagcgtgaattcgctcttctcgaactgagcaagaaacgagacagtgttccagacctg
ccactttggctctggcattcgttcggaacgatgtcagctcttctgcaagaggtagtagct
atatatccggcaatcatgcctgcaaatttgactgctgcgcaatcgaatcgtgtctgcaat
gctctcgcattaatgcagtgtgttgcttcacaccgagagactcgtggaccattcctccat
gctcacattccactttatctgtatcccttcctccataccaccaaagtatcacgttccttt
gagtaccttcgtcttacttcgcttggagtcattggggcactcgtcaagactgatgataaa
gaacaactgcttgtggtcatcaatttcttgctctccacggaaatcattcctctttgcttg
cgtattatggagcaaggaacggagctctcgaaaactgtggcaacattcattctccagaaa
attctcctcgatgacactggtcttttgtacatttgtcaaacgtacgaacgtttcagccat
gttgccatgattctcggaaaaatggttatgaagctgactcgcgagccttcggttcggttg
ttgaaacacgtcgtgagatgttacagtcgtttgagtgataatccaagcctaactttggac
gctcgtgtcgcacaaggcggtgctggtcagaatgtgaaagttcgagctcaacaagctctc
aagcaatgccttccggatcaattgaaagatttgactttcaagaattgtctcaaggaagat
ccgagcaccatgaattggctcagacaattgctcacaaacctt
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