KEGG   Caenorhabditis briggsae (nematode): CBG_18251
Entry
CBG_18251         CDS       T01054                                 
Symbol
Cbr-taf-9
Name
(RefSeq) Protein CBR-TAF-9
  KO
K03133  transcription initiation factor TFIID subunit 9B
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CBG_18251 (Cbr-taf-9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbr03021]
    CBG_18251 (Cbr-taf-9)
   03036 Chromosome and associated proteins [BR:cbr03036]
    CBG_18251 (Cbr-taf-9)
Transcription machinery [BR:cbr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     CBG_18251 (Cbr-taf-9)
   Coactivators
    SAGA/TFTC/STAGA complex
     CBG_18251 (Cbr-taf-9)
Chromosome and associated proteins [BR:cbr03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     CBG_18251 (Cbr-taf-9)
    STAGA complex
     CBG_18251 (Cbr-taf-9)
    TFTC complex
     CBG_18251 (Cbr-taf-9)
    SAGA complex
     CBG_18251 (Cbr-taf-9)
    SLIK complex
     CBG_18251 (Cbr-taf-9)
SSDB
Motif
Pfam: TFIID-31kDa EF-hand_14 TAF CENP-S
Other DBs
NCBI-GeneID: 8584257
NCBI-ProteinID: XP_002642263
WormBase: CBG18251
UniProt: A8XS90 A0AAE9DB13
LinkDB
Position
III:5527228..5528120
AA seq 184 aa
MAEPGEKDAELSTGGPDTFSKEAMAIMSLLGECGVEEFDPRVVSMLMDVQYAVTSKILQV
SSGLSRHADKQKIDSEDVQTAADMLGVLSSNAPDREKILQMANDKNQQPLPQIRHNYGLK
LPNDRFCQLQQNFVYKADDNSQQMETQQVAHTPRIIEPPQSSVLRPEQVQNMLKRRAPDD
DFDS
NT seq 555 nt   +upstreamnt  +downstreamnt
atggcagaaccgggagaaaaagacgcagaactatcaacaggtggaccagacacattcagt
aaagaagctatggcaattatgagtttactcggtgaatgtggagtcgaggagtttgaccca
cgcgttgtttcaatgctaatggatgttcaatacgcagtcacatcgaagattcttcaagtt
tccagtggactctcaagacacgccgataaacagaaaatcgattcagaagacgtgcaaacg
gcagccgatatgctcggcgttctctcatcgaacgctcccgacagagaaaaaattctacaa
atggccaacgacaaaaatcagcaaccacttccgcaaatacgacacaactatggattgaaa
ctaccgaacgatcgattctgtcaactacaacaaaactttgtatacaaagcagacgataat
agtcagcaaatggaaacgcagcaagttgctcacaccccacgcatcatcgagccaccacag
tcatcagtcttgaggcccgagcaagtccagaatatgctcaagcgaagagctcctgatgat
gatttcgattcatga

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