Caenorhabditis briggsae (nematode): CBG_18297
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Entry
CBG_18297 CDS
T01054
Name
(RefSeq) Protein CBG18297
KO
K23288
syndetin
Organism
cbr
Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cbr04131
]
CBG_18297
Membrane trafficking [BR:
cbr04131
]
Protein recycling
Others
EARP complex
CBG_18297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Seryl_tRNA_N
DUF2408
Arm-DNA-bind_2
Motif
Other DBs
NCBI-GeneID:
8584299
NCBI-ProteinID:
XP_002642305
WormBase:
CBG18297
UniProt:
A8XSD2
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All DBs
Position
III:5318094..5321217
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AA seq
930 aa
AA seq
DB search
MERFKQHVSGRISELAEQFSSSNDVKVMLETMNDRVLSPYDIPSTSDEPPPLAVSSHTVS
QNSTPKRNITSKVSEENEIIDSIDASYFIDNDEFDAIDYELKKLCDIDMCYEDIQRERFR
LKSQHTVVSKKISTLIMQKSSSYTNQVGEMENIREKVNGVVDEIISIRKALALATDQTRT
CLGLIANEYKKASLHKLKTTLTTIKSFHEAETRIRETIQEGNFPLAIQMLIETQIQATGY
GQFNCVNDILSKMMELSTLLETELATQLSTIAVVFDSEKYRFVFTAYEMLEKTDHVAEKL
LNVFTDAIETTTTAVVMDKMKEEDRKDDATYTSLCLKLDGEQASTTFREMGFVLCRSFHS
YHKVLQYHNSESASDASQKIYKSLLAARSEIFLTATKRLLTLVESRDFSTMKFDHILDIV
NSINRFNNLGRTYFACDQQKLAASIEKRIEIYFDRYHNERMEELSMFIENESFTLCPVPF
QFTIFDLQDFEFLKESRQEFDNFKTKEELKGDNDNIELIPNDWQNPFCQAAIRSRLQSSY
SQKSSDERSCSTSSAPENLKSQESFSDDPLDEPVSGPLPNLCNTALNLLRFFGRYLRMTA
LLPTLCSKSAPAIIDLYEFFFASICCIFGSEGAECVGRIQRLVTCLDGISKKFSKDKEGN
SPFRKVFQKDNDDKIYPSLSPAVQIAFIDNLYGACERIIAVNSIEFVARQLDLIRPVIES
LLLEDVRDSFSISLDMFYTQVLPCQADAKTLIIDASASRCLRLRSLVESVSSVKWDIGEL
KSDHNPYVEQLTQDYELFAIRLRTIKESGPVNLSSSMERFFWDRTIYYSFKALVQGYGDG
GKCSTEGRALMQLDFQNILLKLEPLCGVKPVPHASFVDGYIKAYYLPENGLEQWIKTHSE
YSSKQLSSLLGAAAHVSKKARLRILDALKD
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggagaggttcaaacagcatgtttcggggagaatcagcgaactggcagagcagttttcg
tcgagtaacgatgtgaaagttatgctagaaacaatgaacgacagagttctgagcccttac
gacattccttctacgtcggatgagcctcctccattggcagtgtccagtcatacagtctcc
cagaactctactcctaaaagaaatataacatcgaaagtatcagaagaaaatgaaattatc
gactccatagacgcctcttattttatagacaacgatgaattcgatgctattgattatgag
ctgaagaaactctgcgacatcgatatgtgctatgaagatattcaaagagaacggtttcgg
ttgaagtctcaacatactgtagtttccaaaaagatatctactctaattatgcaaaagtcc
tcctcatacacaaatcaagtcggtgaaatggaaaacattcgagaaaaggtcaacggcgta
gtagatgaaataatatcaattcgaaaagcgctcgcgctggctactgatcagactcgcacc
tgtctgggactgattgcaaacgaatacaagaaggcgtcgttgcacaaattgaaaacaacc
ttaactacgataaaatcgtttcacgaagctgaaacccgcattcgtgaaacgatacaggaa
ggaaactttccactggccatccaaatgcttattgaaactcaaatccaagccactggttac
ggtcaattcaattgtgtgaacgacatcttatcgaaaatgatggaattgagcacactgcta
gaaacggagctagctacacaattatccacgattgctgtggttttcgattcagagaagtac
cgattcgtgttcactgcatatgagatgcttgagaagacggatcatgttgctgaaaaactg
ttgaatgtgttcactgatgcaatcgaaaccacaaccaccgcggtagttatggacaagatg
aaggaagaagatcgtaaagatgatgccacgtatacaagtctctgtttgaagctagatgga
gaacaagcttcaactacgttccgagaaatgggatttgtgttgtgtagaagtttccactca
taccacaaagttctgcaataccacaactcagaatctgcttctgatgcttctcagaaaata
tataagtccctccttgcggcaagaagtgaaatttttctcactgctactaagcgtttactg
actcttgtcgaatcacgagatttcagtaccatgaaattcgatcacatactggatattgtg
aattccatcaatcgattcaataatcttggaagaacttattttgcctgtgaccaacagaag
ttagcagcatcgatcgagaagaggatagaaatatatttcgatagatatcataatgagaga
atggaggagctgtcaatgttcatcgaaaacgaatccttcacactttgtccagtcccgttc
caattcacaatctttgatctacaggatttcgaatttctcaaggaatcaagacaagagttt
gacaatttcaaaaccaaagaagaactgaaaggagacaatgataacattgagttaataccg
aacgattggcagaatccgttttgccaagctgccatacgatctcgtcttcagtcgtcgtac
agccagaagtcgtcagatgaaagaagctgttcaacatcttcagctcctgagaacttaaaa
tcacaggaaagcttttctgatgatccgctagatgagcctgtgagtggaccacttccaaat
ctgtgcaatacagcgctgaaccttttgcgatttttcggaagatatcttcgtatgaccgca
cttcttcccacactttgctccaaatcagctccagccataatcgatttgtacgaatttttc
tttgcatcgatatgctgcattttcggttctgaaggtgctgaatgcgttggaagaatccaa
agactagttacatgtctggatggaatttcgaagaaattctcaaaagacaaggaagggaat
tctccgttccggaaagtctttcaaaaagataatgatgacaaaatctacccatctttatct
ccagctgtacaaatcgcgtttattgataatctctacggagcttgtgaacgaataattgct
gtgaattcaatcgagttcgtggctcgtcagttagatctcatccgaccggttatcgaatcc
ttacttcttgaagacgtccgagattccttttcaatatcgcttgacatgttttatactcaa
gttcttccgtgtcaagctgatgccaaaactctgatcatcgatgcctcagcttccagatgt
ctccgtttaagaagccttgtagaaagcgtctcatctgtgaaatgggacattggagaattg
aaaagtgaccataatccatatgtggaacaattgacacaagactatgaactgtttgcgatt
cgattaagaaccatcaaagagagtggacccgtcaatttgtcgagttcaatggagagattt
ttctgggacagaaccatctattattcgttcaaggcattagttcaaggctacggagatggt
ggtaaatgctcaacggaaggaagggcattgatgcaattagattttcagaatatattattg
aagctagaaccattatgcggtgtgaagccggttcctcatgcgagctttgtagacggttat
atcaaagcctactatttgccagaaaacggcttggagcaatggattaaaacgcattctgaa
tattcgtcgaaacagttatcctctttgttaggagctgccgctcatgtcagcaaaaaagcg
agacttcggatattagacgctctgaaagattaa
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