Caenorhabditis briggsae (nematode): CBG_19371
Help
Entry
CBG_19371 CDS
T01054
Name
(RefSeq) Protein CBG19371
KO
K14328
regulator of nonsense transcripts 3
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03013
Nucleocytoplasmic transport
cbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CBG_19371
03015 mRNA surveillance pathway
CBG_19371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_19371
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CBG_19371
mRNA cycle factors
P-body specific factors
CBG_19371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
CXXC_Zn-b_euk
Motif
Other DBs
NCBI-GeneID:
8579622
NCBI-ProteinID:
XP_045096761
WormBase:
CBG19371
UniProt:
A8XVG7
LinkDB
All DBs
Position
V:complement(13809483..13811814)
Genome browser
AA seq
462 aa
AA seq
DB search
MSSRSEKRESPDQVKVALRRLPKYMTEKEVLEQISPLPEEVIDTYFLPANLAFDHAAYAT
LILLFSEYCDSMMDFERRFDGYIFVDSRGNDSTAVVEASVNQNFAKCDRPRIKEDSRVGA
ILTDTYYLEFCKKLEKEKSIPIMTLEQQIRKLNQPEDIRTQIDHLETPLVKYFLEKETGR
RREGEARKQRRDFRKAEKQKNVLDVLMKPTVAASTASTSGGPPRKENKEMTDREREKLEK
IEAKKKERNALRKQRFLEDRKKKQQEEREGRGDAAENPKPPREHKKKERPGRAPRPSPAK
TLSEQQGEDWIKKLTDPKAAIKKKHDISVSTKMKQCDGTRSQPAPPTPSTRSEMLEVPGS
RGEANLVEKCKLSILPDLFKSYNIEKNEEWQQIAIFDCRGIEPFDFDPRDDWIANSVDTG
KAFREIDLSEKEWVDFDDKAMEAVEIGEMSIQFTTVRDPKKK
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgagttctcgctctgaaaaacgcgaatcaccggaccaagtgaaagttgcgcttcgccgt
ctgccaaagtatatgacggaaaaggaggttcttgaacaaattagtcctctaccagaagaa
gtcatcgatacatactttcttccagccaatctcgcattcgatcatgctgcctatgcaacg
ctaatccttctcttctccgagtactgtgactcaatgatggactttgagcgtcgttttgac
ggctacatctttgtcgattcccgtggaaatgattcgactgcagttgtcgaggcaagtgtc
aaccagaactttgccaagtgtgatcgcccacgaatcaaggaagactctcgcgttggtgcc
attctcactgatacctactatttggagttttgtaaaaaattggaaaaggagaagtcgatt
ccgattatgactctggagcaacaaattagaaagctcaatcaaccggaagacatcagaact
caaatcgaccatctggagaccccgcttgtgaagtacttcctagaaaaagaaaccggcaga
cgtcgcgaaggcgaagctcgcaagcagcgtcgtgatttcaggaaggcagaaaagcagaaa
aacgttctggatgttctgatgaaaccaactgttgctgcttctactgcgtctacatcaggt
ggtccgccgagaaaagagaataaagaaatgactgatagggaaagagaaaaattggagaag
attgaagcgaaaaagaaagaacgaaatgcacttcggaagcaacgattcctcgaagacaga
aagaaaaaacaacaagaagagcgggaaggtcgaggggatgctgctgagaatccaaagcca
cccagagaacataagaaaaaggagcgtccaggtagagcaccacgtccatctccagcgaag
actctcagtgagcaacaaggcgaggattggatcaaaaaactcactgacccaaaagcagca
atcaagaagaaacacgacatttcagtctccaccaaaatgaaacagtgcgatggcacacga
tcccaaccagcaccaccaactccatctactcgttctgaaatgctcgaagttcccggaagt
cgtggcgaagcgaatcttgtggagaagtgcaagctgtcaatccttccggatctgttcaag
agctacaacattgagaaaaacgaggaatggcagcagattgctatcttcgattgccgtgga
attgagccatttgatttcgatccaagggatgattggattgccaatagtgtcgacactgga
aaagcgttccgtgaaattgatctttccgaaaaggaatgggtcgactttgatgacaaagcg
atggaggctgttgaaatcggagaaatgtcgattcagttcaccactgttcgtgatccaaag
aagaagtga
DBGET
integrated database retrieval system