Caenorhabditis briggsae (nematode): CBG_19671
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Entry
CBG_19671 CDS
T01054
Symbol
Cbr-vps-16
Name
(RefSeq) Protein CBR-VPS-16
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr04140
Autophagy - animal
cbr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
CBG_19671 (Cbr-vps-16)
04148 Efferocytosis
CBG_19671 (Cbr-vps-16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cbr04131
]
CBG_19671 (Cbr-vps-16)
Membrane trafficking [BR:
cbr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
CBG_19671 (Cbr-vps-16)
Hops complex
CBG_19671 (Cbr-vps-16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Clathrin
Motif
Other DBs
NCBI-GeneID:
8576678
NCBI-ProteinID:
XP_002634685
WormBase:
CBG19671
UniProt:
Q60V75
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Position
III:complement(3776265..3779456)
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AA seq
858 aa
AA seq
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MKESTRTSTPSSGAKPKGDREICLRPSSSVFLGDQQLYFTQEYLATNSLNMKYVVYFAAC
QFSGPIAVIYAAPKSWFIWIRTISGRILKRDLPCTDPVFIDWTRAHCLLVLSKNGRAQVL
SSIGEKVSEVFFDNQVSDVHECRTFATSRGDSGIAVMDVDGQVAVVNSVSEPVIWSMRPP
YSELPTAWTAFQPHSQLTHILLIFEAVFLMGCQGESLQVQNHASVWVDSSTKYVKCVVDD
ARSRIAMMTENGKIQIVSIDLSTCFCTVEVTEHEIGKCINFGWVGNSVVFVQMSSSLTVF
VNVSARRKPGDEVRFMSIKMTANARISVEPDGIRLFESTRVEFVEAASREKIAVLNRSLN
EDGAYLYKAAQEMEQGTGHNSFAASTVIQDMYKAIDDCISTACDTWQPEEQKLLLKAARF
GMAYTNTTPDTTKLMRAIKEIRVLNELRMVRTGIPLTHRQYRIIGDTCIINRLIDMGSYS
VAIKVAQWLGGENCESVDRVLLEWVRRSISKVSRSNMKMDQPALEALDEKISAKLLQFPH
VSMADAARRAIEAKLPELARLFIRRETDDESHVAVLLQLNDVSAALTKAAASQRPQLIHQ
VVRHLMTSESRSSYELAISRIPLAQCLYQDLVRQEGETRGISSRQMLALLEQASDFERQT
LFHFDVAEIERNPSERLNALRRAKDAAKSMGDKAIEEILNDVSAFAPLQIQRGQADMSVR
DTIIEIADDTAKVAQLKQQARLNDKQVLLWTIEGLAKKGKMEQLFDLAQKRSPIGYAPFV
KACVRYKRNEEVNKYFAKANGYSDLVAANLAKKNYVDAAKLAYDRRDREVLHAIHMKSHD
DPVQCPRVKQLLNSMDQA
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagtcaactagaacttccacgccctcatctggggcaaaacccaaaggcgataga
gaaatttgtctccgaccgagtagttcggtatttttaggagatcagcagttatacttcact
caagagtatctggcgacgaattcgttgaatatgaagtatgttgtctacttcgcagcttgc
cagttttcgggaccaatcgctgtcatttacgccgccccaaaatcatggttcatctggatt
cgcacgatcagtgggcgaatcttaaaacgagatttgccatgcacagatccagtcttcatc
gattggactcgcgcccattgcctccttgtcctgagcaaaaacggaagagcccaagtgctt
tcatcgatcggagagaaggtttccgaagtctttttcgataatcaagtctccgatgtccat
gagtgtcgtacatttgccacgtcacgaggggatagtggaatcgcagtgatggatgtagat
gggcaggtagcagtggtgaattctgtgtcggaaccagtgatttggagcatgagacctcca
tactcagagcttccgacggcgtggacagcgtttcagccacactctcaattgacgcatatc
cttttgattttcgaggcagtttttctgatgggatgtcaaggagaatcacttcaagttcag
aatcatgcttcggtttgggtggattcaagtacaaaatatgtgaaatgcgttgttgatgat
gctcggagcaggattgcgatgatgacggagaatggaaagatacagatcgtctccattgac
ctgtccacctgcttctgcacagttgaagtcaccgaacacgagattggaaaatgcatcaat
ttcggatgggtcggaaattccgttgtattcgttcaaatgtcctcatcactaactgtcttt
gtcaacgtcagtgctcggaggaagccaggagacgaagtacggtttatgagtataaaaatg
acagctaatgctcgaatcagtgtagaacccgatggcattcgactctttgaatccactcga
gtggaattcgttgaagcggccagcagggaaaagattgcagttctcaaccgaagccttaat
gaagacggtgcctatttgtacaaagcggctcaagaaatggagcaaggaaccggtcacaac
tcattcgctgcttctacagtaatccaggatatgtacaaagctattgatgactgtatctcg
acggcatgtgacacgtggcaaccagaagagcagaagttgcttttgaaggctgctagattc
ggcatggcttataccaatacgacaccggatactacaaaactgatgagagcaatcaaggag
atccgagtgctcaatgagcttcgaatggttagaactggcatccctctcactcatcggcag
tatcgaatcattggagatacttgcataatcaatcgtcttatcgacatgggctcctacagt
gtcgccatcaaagtagctcaatggctcggtggagagaattgtgagagtgtggatcgagta
ctcctcgaatgggttcgtcgttcgatcagcaaagtgtctcggagcaatatgaagatggat
caacctgcactggaggctctagatgagaagatatccgcgaagctgctacagttcccacat
gtatcgatggctgatgctgcccgtcgagctatcgaagccaagcttccagagctcgctaga
ctttttattcgacgagagacggatgacgagagccacgtagctgttctcctacagttgaac
gatgtgtcagcagcacttacaaaggcagcagcgtcccagagacctcaactgatccatcaa
gtggtaagacatttgatgacaagtgagagcagatccagttatgaattggctatcagtaga
atcccacttgctcaatgtctttatcaagacctagttcgtcaagagggagaaacaagagga
atctcttctcgacagatgttggcgctcttggagcaagctagcgatttcgagaggcaaacg
ctgtttcatttcgatgttgctgaaattgagagaaatcccagcgaacgtttgaatgctctc
cgtcgtgcgaaagatgcggcgaaaagcatgggtgacaaagcgatcgaggagattctgaac
gatgtcagtgcatttgctccattgcaaattcagcggggtcaagcggatatgtcggtgagg
gatacgattattgagattgcggatgatacggcgaaagtggctcagttgaagcagcaagcg
agattgaacgataagcaagttctcctatggactatcgaaggtctggcaaagaagggaaaa
atggagcagttgtttgatttggctcagaaacgatcgccaattggatacgcgccatttgtc
aaagcctgtgttcgatacaagagaaacgaggaggtcaacaagtacttcgccaaagccaat
ggctactcagatctggtcgctgcgaatctggccaagaagaattatgtggatgctgccaag
ctggcttatgatcggagggatcgggaggtactccatgctattcacatgaagtcccacgat
gatccggtgcaatgtccgagagtgaagcagttgctgaattcaatggatcaggcttga
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