Caenorhabditis briggsae (nematode): CBG_19959
Help
Entry
CBG_19959 CDS
T01054
Symbol
Cbr-hdac-6
Name
(RefSeq) Protein CBR-HDAC-6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cbr01009
]
CBG_19959 (Cbr-hdac-6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_19959 (Cbr-hdac-6)
04131 Membrane trafficking [BR:
cbr04131
]
CBG_19959 (Cbr-hdac-6)
03036 Chromosome and associated proteins [BR:
cbr03036
]
CBG_19959 (Cbr-hdac-6)
Enzymes [BR:
cbr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
CBG_19959 (Cbr-hdac-6)
Protein phosphatases and associated proteins [BR:
cbr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
CBG_19959 (Cbr-hdac-6)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
CBG_19959 (Cbr-hdac-6)
Membrane trafficking [BR:
cbr04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
CBG_19959 (Cbr-hdac-6)
Chromosome and associated proteins [BR:
cbr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
CBG_19959 (Cbr-hdac-6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
8575893
NCBI-ProteinID:
XP_045096924
WormBase:
CBG19959
LinkDB
All DBs
Position
IV:complement(5820225..5828970)
Genome browser
AA seq
983 aa
AA seq
DB search
MIFEDCQKNRKLGHTLIGFNESQDEHKNTVCPTHPESPDRIQKIKEALKQTKVLEKCHVL
TKGEVKELVASEKKTQEEINSQCENYDSVFMTENSMKVAKDGVACVRDLTNRIMANEASN
GFAVIRPPGHHADSASPCGFCLFNNVAQAAEEAFFSGAERILIVDLDVHHGQGTQRIFYE
DKRVFYFSIHRHEHGLFWPHLPESDFDHIGAGLGVGYNANVPLNETGCTDSDYLSILFHV
LMPLATQFDPHFVIISAGFDSLRGDPIGGMQLTPDGYSHFLYHLKSLAQGRMLVVLEGGY
NHQMSAVAAQKCVRVLLGHAPFPAQVKDPPKESTVTSCVNLVTCLRNYWNCFDYFPSRTS
LRLAQWPIINSKVEFKYDPNNRPADTGEIVQTDLITSNFMASDSLPAGEMETFIYFNEGD
EAHFDLEEDNHPEKPARTRRILKTLQESGVLDKCIERNTERIATDDEIRMVHTKKMLDHL
KQTETMKDEELMEEAENEFNSIYLTRDSLKVARKAVGACLQLSWWDLLFSTDLIFNTNIP
DRVAIQNKNFNIYSNPLSPNKNRFLKKSIFQSIDEIYKKPAGQRNALVIVRPPGHHASAS
KSSGFCIFNNVAVAAKYAQRHHRAKRVLILDWDVHHGNGTQEIFYEDPSVMYMSIHRHDK
GNFYPIGEPKDYFDVGESAGEGTSVNVPFSGAPMGDLEYQMAFQRVIMPIAYQFNPDLVI
ISAGFDAAIDDPLGEYKVTPETFAWMTYQLSSLAAGRIITVLEGGYNLTSISNSALAVCE
VLQNRAMLRRLKNEKEQFGKPHDIQSSCIKTLREVCAVQQNHWSILKGFQVLPSTLGLFD
LNEDTEMSDQSSSGSSSTRAPSHQDLEVMSMGAAHAVVPLSECPHLHQVEPLPPTGINAA
STCTECTIGAEVWTCLTCYKYNCGRFVNEHALMHHLNSSHPMALSMADLSVWCYPCEAYV
HNPVLIPAKSAAHQSKFGEQMPS
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgattttcgaggactgccagaagaatagaaagctgggccacacactcatcggattcaac
gagtcacaggatgaacacaagaataccgtctgcccgacgcatccggaatcgccggatcgg
attcagaagatcaaggaggcgttgaaacagacaaaagtgctggaaaagtgtcacgttctc
acaaaaggagaggtgaaggagttggtggcgtcggagaagaagacacaagaagagatcaat
tcgcagtgtgaaaattatgattctgttttcatgacagagaactcgatgaaagtggcgaaa
gatggtgtagcctgtgttcgagacctgacaaatagaatcatggcgaatgaggcatcgaac
ggatttgcagtgattcgaccgccaggacatcatgcggattctgcgtcgccatgtggattt
tgtctattcaataatgttgcccaggccgctgaagaagccttcttttctggagctgaacga
attctaattgttgatttagacgtacatcatgggcagggcacacagaggattttctatgaa
gataaacgcgtattctacttctccatccatcgtcacgaacatggtctcttctggccgcat
ctcccagaatccgacttcgatcacattggtgcgggtctaggcgttggctacaatgcaaat
gtgcctttaaacgaaactggatgcaccgattcggactatctctcaattttattccatgtt
ctaatgccacttgccactcaattcgatcctcattttgttatcatttccgctggtttcgat
tccctccgaggggatccgattggtggaatgcaactgactccggatggatactctcatttt
ctctatcacctaaaatcactggctcaggggaggatgctagttgtattggagggtggttat
aaccatcagatgtcagctgtggcagctcagaagtgtgtgagggtgctgctaggccacgcc
ccatttccggcgcaggtgaaggatcctcctaaagagagcactgtaacatcatgtgtgaac
cttgtcacctgcctacggaactattggaattgcttcgactacttcccatcgaggacatct
ttaagactggctcaatggcctattatcaattcaaaagtggaattcaaatacgaccctaat
aaccgccccgctgacactggagaaatcgttcaaacagatttgatcacttcaaattttatg
gcttccgactctttgccagccggtgaaatggagacgttcatctatttcaacgaaggcgat
gaagcgcatttcgatttggaagaggataatcatccggagaagccagcgagaactagaagg
attctgaagacgttgcaagagtctggggtactggacaagtgtatagagaggaacacagag
agaattgcgacggacgatgagattcgaatggttcatacgaagaagatgttggatcatttg
aagcaaacggagacgatgaaggatgaagaattgatggaagaagcggagaatgagttcaat
agtatttatttgacaagagattcgctgaaagtggctaggaaggcagttggagcgtgttta
cagttgtcgtggtgggaccttcttttttccacagatttgatttttaataccaatattcca
gatagagtagccattcaaaataaaaactttaatatctacagtaatcccctctcccccaac
aaaaatcgctttttgaaaaaaagtattttccagtccattgacgaaatctacaaaaagcca
gccggccaacgaaacgcgctcgtcatcgtccgtcctccaggccatcatgcgtccgcttcg
aaatccagtggattctgtattttcaataatgtagcagtggcggcgaagtatgctcaacga
catcatcgagcgaaacgagtgttgattctcgactgggatgttcatcatggcaatgggaca
caggagattttctatgaggatccaagtgtaatgtacatgtcgattcatcgtcacgataag
ggcaacttctaccccatcggcgagcccaaagattacttcgacgttggagagagtgctgga
gaaggcacttcagtcaacgtgccgttcagcggagcaccaatgggagatctcgaatatcaa
atggcattccaacgagtgataatgccaattgcctatcagttcaaccccgatttagttatt
atttccgctggctttgatgcagcaatagacgatccattgggagaatacaaagtcactcct
gaaaccttcgcctggatgacttatcaactctcttctcttgccgctggacgtattatcacc
gtactcgaaggtggctacaacctaacatccatctcaaacagtgctctcgccgtctgtgaa
gttcttcagaatcgagcgatgcttcgtcggctaaaaaatgaaaaagagcaattcggaaag
ccccatgatatccaatcgtcgtgtattaaaacccttcgagaagtttgcgcggttcagcag
aaccattggagtattctgaaaggtttccaggtccttccctcgactctcggcctatttgat
ctaaacgaagacaccgaaatgagcgatcaatcgtcgtctggctcatcatcgactcgtgct
ccatctcatcaggatttggaagtgatgagcatgggagccgcccacgccgtcgttcctctc
tccgaatgtccacatcttcatcaagttgaaccacttccgccgactggaatcaatgcggcg
agcacgtgcacagaatgtacgattggagccgaagtttggacatgtctcacttgttataaa
tacaactgcggccgtttcgtcaacgagcacgccctaatgcatcatctgaattcctcccat
ccgatggctctctccatggccgatctctccgtttggtgctatccgtgtgaagcctacgtt
cataatccagtcctcattcccgccaaatccgcagctcatcagagcaaatttggcgagcaa
atgccatcctaa
DBGET
integrated database retrieval system
