KEGG   Caenorhabditis briggsae (nematode): CBG_19980
Entry
CBG_19980         CDS       T01054                                 
Name
(RefSeq) Protein CBG19980
  KO
K12881  THO complex subunit 4
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03013  Nucleocytoplasmic transport
cbr03015  mRNA surveillance pathway
cbr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CBG_19980
  09122 Translation
   03013 Nucleocytoplasmic transport
    CBG_19980
   03015 mRNA surveillance pathway
    CBG_19980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_19980
   03041 Spliceosome [BR:cbr03041]
    CBG_19980
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CBG_19980
    TREX complex
     CBG_19980
Spliceosome [BR:cbr03041]
 Complex C
  Other components
   EJC/TREX
    CBG_19980
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CBG_19980
SSDB
Motif
Pfam: RRM_1 DUF1269
Other DBs
NCBI-GeneID: 8575910
NCBI-ProteinID: XP_002633914
WormBase: CBG19980
UniProt: A0AAE9D4G6 A8XWV3
LinkDB
Position
IV:complement(5696477..5697428)
AA seq 213 aa
MYADEVEKERSRGGFKKSFSSGSRAGIDGKWKRDMFQTANRPQKASYTNKSRQTSFLSKA
GAAAAAVGGGAAPRSITTASIRGRNAPVVKKEVPTGPSTLFISNLASSVTQEDLEELFDQ
YHPEVVQLHFDSAGASLGTADLVVPQPQVALIQKALEGVLLDGQQIEVLETNVAKPVSVF
DRIKKVSRQNDFKPKMRVVVGNRGRVVKGGRGF
NT seq 642 nt   +upstreamnt  +downstreamnt
atgtacgctgacgaagtcgaaaaggagcgatcccgtggcggtttcaagaagagcttcagc
agcggatctcgcgcaggaatcgatggaaaatggaagcgggacatgttccagacggcgaat
cgaccacaaaaagctagctacacaaacaaaagccgacagacgagctttttgagcaaagcg
ggagctgcggcggctgctgtaggtggtggcgctgcccccagaagcatcacaacggcgtcg
attcgtggaagaaatgctccagtagtaaagaaggaggttccaactggaccatccacactt
ttcatcagtaacttggcatcgtcggtgacacaggaagacctcgaagagctgttcgaccag
tatcatccagaagtcgtgcaacttcactttgattctgctggagccagtctcggaaccgct
gacctcgtcgttcctcaaccacaagtggcattgattcagaaggcgttggaaggtgttctt
ctcgacggacagcagattgaggtgctcgagacgaacgtcgccaagccggtttccgttttc
gatcgtatcaagaaggtctctcgccagaacgacttcaagccaaaaatgcgcgtcgtcgtc
ggaaaccgaggaagagtggtgaagggaggacgtggattctga

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