Caenorhabditis briggsae (nematode): CBG_19980
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Entry
CBG_19980 CDS
T01054
Name
(RefSeq) Protein CBG19980
KO
K12881
THO complex subunit 4
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03013
Nucleocytoplasmic transport
cbr03015
mRNA surveillance pathway
cbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CBG_19980
09122 Translation
03013 Nucleocytoplasmic transport
CBG_19980
03015 mRNA surveillance pathway
CBG_19980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_19980
03041 Spliceosome [BR:
cbr03041
]
CBG_19980
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CBG_19980
TREX complex
CBG_19980
Spliceosome [BR:
cbr03041
]
Complex C
Other components
EJC/TREX
CBG_19980
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CBG_19980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
DUF1269
Motif
Other DBs
NCBI-GeneID:
8575910
NCBI-ProteinID:
XP_002633914
WormBase:
CBG19980
UniProt:
A0AAE9D4G6
A8XWV3
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All DBs
Position
IV:complement(5696477..5697428)
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AA seq
213 aa
AA seq
DB search
MYADEVEKERSRGGFKKSFSSGSRAGIDGKWKRDMFQTANRPQKASYTNKSRQTSFLSKA
GAAAAAVGGGAAPRSITTASIRGRNAPVVKKEVPTGPSTLFISNLASSVTQEDLEELFDQ
YHPEVVQLHFDSAGASLGTADLVVPQPQVALIQKALEGVLLDGQQIEVLETNVAKPVSVF
DRIKKVSRQNDFKPKMRVVVGNRGRVVKGGRGF
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgtacgctgacgaagtcgaaaaggagcgatcccgtggcggtttcaagaagagcttcagc
agcggatctcgcgcaggaatcgatggaaaatggaagcgggacatgttccagacggcgaat
cgaccacaaaaagctagctacacaaacaaaagccgacagacgagctttttgagcaaagcg
ggagctgcggcggctgctgtaggtggtggcgctgcccccagaagcatcacaacggcgtcg
attcgtggaagaaatgctccagtagtaaagaaggaggttccaactggaccatccacactt
ttcatcagtaacttggcatcgtcggtgacacaggaagacctcgaagagctgttcgaccag
tatcatccagaagtcgtgcaacttcactttgattctgctggagccagtctcggaaccgct
gacctcgtcgttcctcaaccacaagtggcattgattcagaaggcgttggaaggtgttctt
ctcgacggacagcagattgaggtgctcgagacgaacgtcgccaagccggtttccgttttc
gatcgtatcaagaaggtctctcgccagaacgacttcaagccaaaaatgcgcgtcgtcgtc
ggaaaccgaggaagagtggtgaagggaggacgtggattctga
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