Caenorhabditis briggsae (nematode): CBG_20003
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Entry
CBG_20003 CDS
T01054
Symbol
Cbr-lam-1
Name
(RefSeq) Protein CBR-LAM-1
KO
K05636
laminin, beta 1
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
CBG_20003 (Cbr-lam-1)
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Gene cluster
GFIT
Motif
Pfam:
Laminin_EGF
Laminin_N
LAMININ_IV_B
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
8575925
NCBI-ProteinID:
XP_045096932
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Position
IV:complement(5564802..5575874)
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AA seq
1183 aa
AA seq
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MTLLTICLMGARYLFLFSLFFCFSLIVYVLKIFIYRYFFNKVHPISSNETKSHRKSKCCD
CRFGGQRYGSRCSLYPHIPNKIENVVTEVMDDKNRNWWQSENGVQNATIQLDLEAEFHFT
HLIMTFKSFRPAAMIIEKSADFGKTWQIYRYFAYDCDSSFPGIPEGHPKKHTDVICTNQY
SDVAPSTGGELVYKVISPHIVTENPYADEISTLLKITNLRFNFTKLHTLGDDLLDYRPEI
DEKYYYAIYEIVVRGSCSCYGHASRCIPIDPHASPNTVMERPDIVHGRCECMHNTEGLNC
EKCKAFYNDLPWRPAIGDEKNECRQCNCNRHALGCHFDRAVYEASGFVSGGVCDDCMHNT
QGKNCEQCKPFFYRDPRRTIDDPHVCLPCECDKAGSQNKGICEGEEDAERGLVAGKCYCK
TNVDGNRCDRCKNGYWNLTEANIDGCVACTCNLLGTYNNEGCDKYTGMCTCKRLVTGENC
DQCLPEHYGLSEHVDGCKACDCDIGGSYDNSCDVSTGQCKCREGFSGRRCETADSSFYCA
DITHYVYEAEYANLTRGEVKTREWPTQTHEQTWTGEGFAQVSEGSIITVNPMVEVSQKYN
IIIRHDGARDPVGWENVQITVVRPEAEGSGFCADAPPSDDFLIARIYPGSRYIEVQPAVC
LEAGVQYELRIQFNEKRTNSHPQERAAANILIDSILLAPPTSELHIFQGSARAEQHLTEY
NRYQCRHLALSLSLFKDQRNEVCERYVCPVAAALLNKTSECNCDATGSVSGICSVHGGQC
ECKPNVVGRRCDQCAIGTYGFGPTGCKKCDCDAVGSLGNDCDKQSGQCVCREKGIYGRQC
NQCQPGFWGFPECRTCQCNDHANICDQSTGACIECRDLTTGHYCDRCQDGYYGDPRLGVG
IPCKPCPCPGGPTSGYQHADTCYLRNSGNNTQDIVCNCKSGYQGERCGECAQNHWGSPRE
VGGTCERCDCNGNIDMSMEGSCDAATGECLKCLHHTEGAQCEHCVDGYYGDAKLKSCQRC
TPHMCHHNGTIAVGKKEIECICPPPWDGRFCERLACWRKTIPTQQHRYRNNGDHCICGNH
YSGENCDVVKSCLNEGKLENGKCNCRDGWHGELCDKRCPKGHLEYAFYRHGVQRLMSRCV
QLSSSPLCMQSGVRSLFARVAQSVAAPHPQSSPSQVQLLEGHL
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgactttactcaccatctgtttaatgggagctcgatacctcttccttttttctctattt
ttctgtttcagtctaattgtatatgttctaaaaatctttatttatcgttactttttcaat
aaagtccatcccatctcctcaaacgaaaccaaatcgcatcgcaaatcaaaatgttgcgat
tgccgctttggtggccagcgatatggctctcggtgctcattatatccacatatacccaac
aaaatcgaaaacgtcgtcaccgaagtaatggacgacaagaaccgaaactggtggcaatcc
gagaatggtgttcaaaacgcaacaattcaattggacctggaagcagaattccatttcact
cacttgattatgacattcaaatccttccgtccagctgctatgattatcgaaaaatcagcg
gatttcggaaaaacgtggcaaatctacagatactttgcgtacgactgtgacagcagtttc
ccaggaattccagaaggacatccgaagaaacatacagatgtcatttgtacgaatcagtat
tctgatgttgccccatcgactggaggagaattggtttataaggtcatctccccacatatt
gttaccgagaatccatatgctgacgagatttcgacattgttgaagattaccaatttgaga
ttcaatttcacaaaattgcacactcttggagatgacttgttggattacagaccagaaatc
gacgagaagtactactacgccatctacgaaatcgttgttcgcggttcgtgctcttgttac
ggtcacgcctccagatgtattccaatcgatccacacgccagtccaaataccgtcatggag
cgtccggatattgttcatggacgttgcgagtgtatgcacaatacagaaggattgaattgt
gaaaaatgcaaagctttctataatgatttgccatggagaccggctattggagatgagaag
aacgagtgtagacagtgtaattgtaatcgacatgcattgggatgtcacttcgacagagct
gtgtatgaagctagtggattcgtgtctggtggagtttgcgacgactgtatgcacaacacc
caaggaaagaactgcgaacagtgcaaaccattcttctatcgtgatccaagacgtaccatc
gacgatccacatgtctgtttgccatgcgaatgtgacaaagctggatctcagaataaggga
atctgtgagggagaagaagacgccgagcgtggtcttgtcgctggaaaatgctactgtaaa
acgaatgtcgatggaaaccgatgtgatcgatgcaagaatggatactggaatctcactgaa
gccaacatcgatggatgcgttgcttgtacttgcaatctgttgggaacttataacaacgaa
ggatgtgataagtacactgggatgtgcacttgtaagagattggtcaccggagagaactgc
gatcaatgtctcccagaacactacgggctctcggagcatgtcgatggatgcaaggcttgt
gattgtgatattggaggttcttatgataactcttgtgatgtttctactggacagtgcaag
tgtagagaaggattcagtggaagaagatgcgaaactgccgactcctcattctactgtgct
gatatcacccactatgtctacgaagcggagtatgctaatctgactcgtggagaagtgaag
acccgggagtggccaacccagacacacgaacagacctggactggagaaggattcgctcaa
gtcagcgaaggatccattatcactgtgaatccaatggtcgaagtctcccaaaagtataac
atcatcattcgccacgatggagcacgtgacccagttggatgggagaacgttcaaatcact
gtggttcgaccagaagctgaaggaagtggattctgtgctgatgcaccaccatctgatgac
tttttgattgccagaatctaccctggatccagatacattgaagttcaaccagcagtttgc
ttggaagctggagtacagtatgaattgagaattcagttcaacgagaagagaaccaactct
catccacaagaacgtgccgctgctaacattctcattgactcgattctcttggctccgccc
acttctgaacttcatatcttccaaggatccgctagagctgagcaacatctcaccgaatac
aatcgctatcaatgtagacatctcgctttgtctctttcactatttaaggatcaacggaac
gaagtctgtgagagatatgtgtgtccagtggctgctgctcttctcaataagacgagtgaa
tgtaattgtgatgctactggatccgtctctggaatctgttccgttcatggaggacaatgt
gaatgcaaaccaaatgttgttggaagacgttgtgaccaatgtgcaattggaacctacgga
ttcggaccaaccggatgtaaaaagtgcgattgtgacgctgttggatccctcggaaacgac
tgtgacaaacaatccggacagtgtgtttgcagagaaaagggtatctatggaagacagtgt
aatcagtgccagcctggcttctggggattcccagagtgcagaacttgtcaatgtaacgat
cacgccaacatttgcgatcagtcaactggagcgtgtatcgagtgtagagaccttaccact
ggacattattgtgatagatgtcaagatggatattatggagatccaagattgggagttggt
attccatgtaaaccatgcccatgtccaggagggccaaccagtggatatcaacatgctgac
acctgctatctgagaaattcaggaaacaacactcaagatattgtttgtaattgcaaatcc
ggctaccaaggagaacgttgcggtgaatgcgctcaaaaccattggggatcgccacgcgag
gtcggtggaacttgtgaacgatgtgattgtaatggaaacattgacatgtcgatggaagga
agttgtgatgcggccaccggagaatgtctcaagtgtcttcatcataccgaaggagctcag
tgtgagcattgtgttgatggatattatggagatgcaaagttgaagagttgtcagagatgc
accccacacatgtgccatcacaacggaactatcgctgttggaaagaaggaaatcgagtgt
atctgtccaccaccatgggacggaagattctgtgaacgtttggcctgctggcgaaagaca
attccaactcaacagcacagataccgtaacaacggagatcactgcatctgtggtaatcat
tattctggagagaactgcgatgtcgtcaaatcgtgcttgaatgagggaaaactcgagaat
ggaaagtgcaattgtcgtgatggatggcacggagagctatgtgataagagatgtccaaag
ggacatctagagtatgcattctaccgtcacggtgtacaacgcttaatgtcacgctgcgta
cagctgtcgtcctcgcctttatgtatgcaatcgggcgtgcgctctctctttgcccgcgtg
gctcagtcggtagcggcgccgcaccctcaatcatcgccctcacaagttcaactcctcgag
gggcatctttga
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