Caenorhabditis briggsae (nematode): CBG_20440
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Entry
CBG_20440 CDS
T01054
Symbol
Cbr-tsr-1
Name
(RefSeq) Protein CBR-TSR-1
KO
K15436
transportin-3
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03013
Nucleocytoplasmic transport
cbr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CBG_20440 (Cbr-tsr-1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
CBG_20440 (Cbr-tsr-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cbr03016
]
CBG_20440 (Cbr-tsr-1)
Transfer RNA biogenesis [BR:
cbr03016
]
Eukaryotic type
tRNA transport factors
tRNA import factors
CBG_20440 (Cbr-tsr-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_TNPO3_IPO13_4th
TPR_TNPO3_IPO13_2nd
Xpo1
TPR_TNPO3_IPO13_3rd
Motif
Other DBs
NCBI-GeneID:
8574057
NCBI-ProteinID:
XP_045097045
WormBase:
CBG20440
LinkDB
All DBs
Position
II:14732121..14749163
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AA seq
970 aa
AA seq
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MDSIDTVCRAIDAFYSGGPETQLAQKFLQNFQETVILAHFPPISAHFGPFFMDFKPFFMD
FGPXXXXXXXXXXXXRHGAVAHDAQSEATTTQLCLAIADLYIQVPTWNNWIFELLAQCQS
LEGDRTQMTLTLLQVFPEEAENIRGIGENRRAAIREELAACEQPMISFLSHVLEKFHTNM
EVLKKVFKCLESNLQNQAMRTDHFAVSPLISSVFHVIASIDPNIPSTLHETATNCVVAAL
YRVEDIETHAKLAEIIHKGVISLVEPFEKAQQMEDMDRLQNIARIFVELIESFYVQIVND
ANPDPQAVGSLACFDLLLLVANHHDYSLIEMTFGVWYRVTEELFKYDDDQYIGRFRPYAE
RFIMCLYDHCKMEPDDTEDVLDDSSEFGEFRTKAIEALRDVVFIVNSDKCIQMMHQKILE
LCQKPGAGWEESEAALFVMAAVVQNILPESEGHMPDIIRLVTSLPIESPPALIVTALNLL
SDLNDWLELHTHLLEPVVQWILRFATDPTFAYHVAVVFDRITCRCAVQLQGLLPQLLSLI
TALQTTRTNGIRVEEAICNLTRACATIIAKLPPAESKLAMEQLCEPIITNLNRTVDATDA
THANNNNNNTGGGGNKENEGGHRGKTYESWASLSSRPILWIDRCAFVFKDVWNPSNRAAV
PSMQEQCLWLPVAQKLIEALLKAARKFEGTPRIIEHAIRSVRLIFRALGPQSMPFVEEVV
TMMIETYPKHRHSSFLYLASVIVDEYGQLDKMRPGLLQMLEVLSHNTFPLLQGLGAVNHP
DTVDDLFRLAQRFTMRATTVFFTNVVSQMLFVCAVSNIWLDHMEASRSIIKFVVEVLDQL
ASAKRVKYTDDGVTAAQLLVNQQAEKIMDSALWMSLFSHSGQVRREMADLILQIGRHDEE
KFKERLAHAVSALPNAPLKATPQQLTEFVENVVKEIFQFSIISESGTFKNSKTQFSERSR
NIAFFEIQKF
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggactcgatagacactgtgtgtcgagccatcgacgcattctatagtggtggaccggag
acgcagctggcacagaaattcttgcagaatttccaggaaacggtcattttagctcatttt
ccgcctatttcggctcattttggaccatttttcatggattttaagccatttttcatggat
ttcggaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccgccacggagccgtc
gcccacgatgctcaatcggaagccacaacgacccagttgtgtctagcgatcgctgacctc
tatattcaggtgccaacgtggaataattggattttcgaactgttggctcaatgtcaatcg
ctggaaggtgaccgtacccagatgacactgaccctcctacaagtgttcccagaagaggct
gaaaatatccgaggaattggcgagaatcgacgagccgcgatccgagaggagttggccgct
tgtgagcagccaatgatcagttttttatcccatgttctcgagaaattccacacgaatatg
gaggtgttgaaaaaagtcttcaagtgtctggaatcgaatcttcagaatcaggcgatgcgc
acggaccattttgcggtatctccactgatttcatccgtattccacgtcatcgcatcaatc
gacccgaatattccatcaacactacatgaaacggcgacgaattgtgtcgttgcggcactt
tatcgagttgaagacattgaaacacacgcaaaactggctgaaattatccataaaggtgtc
atttcgctggtcgaaccgttcgagaaggcccagcagatggaagatatggatagactgcag
aacattgcccgtatattcgtcgagctcatcgaatcgttctacgttcaaatcgtcaacgac
gcgaatccggacccgcaggcggtgggaagtttggcgtgttttgatttgttgctgctggtg
gccaaccatcatgattattcgctcatcgaaatgacatttggggtgtggtatcgtgtgacc
gaggagctcttcaaatacgacgacgatcagtacattggccgtttccgtccgtacgccgag
agattcattatgtgcctctatgatcactgtaaaatggagccagacgatacagaagacgtg
ctggacgactcgtcagaatttggagaattccgaacgaaggccattgaagcgttgcgggat
gtggttttcattgtcaactcggataagtgtattcagatgatgcatcagaagattctggaa
ctgtgccaaaagccgggcgccggatgggaggagtctgaagcggcgttgtttgtgatggcc
gccgtcgttcagaatatattaccagaatccgaaggacacatgcctgacatcatccgtctg
gtgacgtcactgccaatagaatcaccaccagcactaattgtgacggcgttgaacttacta
tcggatttgaatgattggttggagctgcacacacatttgctggaacccgtcgttcaatgg
attctgcgattcgccacggaccccacattcgcctatcacgtcgctgtggtttttgatcgg
atcacatgccgatgtgccgtccaacttcaaggtctcctcccgcaattgctcagccttatc
accgcactacaaactacacgaaccaacgggatacgcgtcgaggaggcgatttgtaacctg
acacgagcgtgtgcgacgataatcgcgaaactaccgccggccgagtcgaaattggcaatg
gagcagctttgcgaaccgattatcacgaatttgaataggacagtcgacgctacggatgcc
acccatgccaacaacaataacaacaatacgggcggtggtggaaataaggaaaacgaagga
ggccatcgtgggaaaacgtacgaatcgtgggcatcgctctcgtcacgacccattttatgg
atcgatcgatgcgcttttgtgtttaaagacgtttggaatccatcgaatcgagccgccgtt
ccatcgatgcaggagcaatgcctatggctcccagtcgcccaaaaattgattgaagcactt
ttgaaagcggcgagaaagtttgaaggcaccccacggatcattgagcacgccattcgatct
gtccggctcattttcagggctctcggaccacaatccatgccttttgtggaggaagttgtc
accatgatgatcgaaacgtaccccaaacaccgacattcgtcgttcctgtacctggcatcg
gtgattgttgacgagtatgggcagctggacaaaatgcggcccggacttttgcaaatgcta
gaggtgctctcccacaacacattccccctattacaaggattgggcgccgtgaatcatccg
gatacggtagacgatctattccgactggcacagcgattcacaatgcgcgcgactaccgta
ttcttcaccaacgtcgtctcgcaaatgctcttcgtttgcgcggtctcgaatatctggttg
gatcatatggaagcgtcgagaagtatcatcaaatttgttgtcgaggtgttggatcagcta
gcgtcggcgaaacgggtaaaatacacggatgacggtgtgacggccgcccaactcctcgtc
aatcaacaagctgagaaaattatggattccgcactctggatgtcacttttctcgcattcc
ggacaagttcgaagagagatggccgacttgattcttcaaattggacggcacgatgaagag
aaattcaaagaacgtctcgcccacgccgtctcggctctccccaacgccccgctcaaagcg
acaccacaacaactgacggaattcgtggagaatgtggttaaagaaatttttcaattttct
ataatttcagaatctgggacgttcaaaaattctaaaactcaattttctgaaagatctcga
aatattgcattttttgaaattcagaaattctga
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