Caenorhabditis briggsae (nematode): CBG_20485
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Entry
CBG_20485 CDS
T01054
Symbol
Cbr-him-1
Name
(RefSeq) Protein CBR-HIM-1
KO
K06636
structural maintenance of chromosome 1
Organism
cbr
Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cbr03036
]
CBG_20485 (Cbr-him-1)
Chromosome and associated proteins [BR:
cbr03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
CBG_20485 (Cbr-him-1)
Meiosis-specific proteins
Cohesin complex and associated proteins
CBG_20485 (Cbr-him-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_23
AAA_15
AAA_29
CENP-Q
Phage_phiJL001_Gp84_N
Motif
Other DBs
NCBI-GeneID:
8588597
NCBI-ProteinID:
XP_045097060
WormBase:
CBG20485
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Position
I:complement(6701596..6706888)
Genome browser
AA seq
1289 aa
AA seq
DB search
MRGGSSGGTGTTSNGLTSTVDSLPGKGHLHTLEIENFKSYKGKHIIGPFSRFTAIIGPNG
SGKSNLMDAISFVLGERPTSLRVKKYTDLIHGAPINRPVGKKCRVTMNYKYADGTIKAFA
RGVNNGTSENYLDGQLVTKEAYAAEMESIQIFIKARNFLVYQGAIESIAMKNPKERTQLF
EELSRSYEFQNEYEKLKNEMTKAEDDTQHNMNKRRGIAQEKREAKMEKDEAEKYQTMKNE
LAAKSTMLYLHQLFHCERLIDESKEKINEQKKIIAALETTKTAEELKIQAVHTEHKKVQR
EVQKLNRKLDSQESALAQKQQERLSLKVAVAHEFKKLESANKALSAAEALAENSAAQLAD
LKKRKADMEGQKVAYEAEVQGMMDGGDLNLSEEQRNEYQELRNLADQESALIQRNLLTAV
QVLEGHKSCLNHELRKQKEMQERVRQKEADVQRLERQIAALSTKIAETEEEHKALVKALK
KLEDSVVIDKSAMGDLSKELIAVNRQLSDASGDSAEGERNQRRVEAITSLKSAFPEAVYG
RLVDLCQPSHKRFNIATTKILQKHMNSIVCDTEETAHKAIEFLKTNRFATETFLPNDALV
VNPINEKLREIRRPVGVKLVFDVINVQNQNARKALQFVCGNSLVCENQDDAKALAYGGTE
LKDRYKAVSMDGTLFQQSGVLSGGSADLRQKAKKWDEKVVKQLREKRDNLNEKIADLQKH
RRREIEVEAERGKIASIEQRLIMWKNELKSLQQNHLMRLQNELEGLNAEEEQIPPKIERW
QEKVQESQAVVQNLETASNKVADEKFAGFCQRLGIESIRDYENRELRIQQEIRDKIRSFD
DELEKLNYEIDFLTEQDGNKKVADEKKKVAKIDATYKEMKSKEKAAKNAEEQHIAATEEV
KAVLEEKKALAAKLEAEWNEAKKASQSSLKEYTKAEKTLVAVESLMKKKQYERHSLLHSV
KLGQLALPLKSGMEIPNRIVSIFVPKAPDDMSDSDSQTDGAADRPSVSDEQIQREQHIKI
NYDSLPHDYKEIDDDDGVRQATNRLNVEIEELQKNVSKMNAPNLRANQRMAEVREREAES
SDQLEAARRKAKAIRQKFERVKTERYRRFQDFFEPVSNNIDDIYKHLSRNTSAQAFLGAE
NMEEPYLDGIQYNCVAPGKRFRPMDNLSGGEKTIAALALLFAVHGRNPAPFFVLDEIDAA
LDNTNIGKVASYICEYARDHMQIIVISLKEEFYNKADSLIGIFPYPAACTTSGVLTFDLT
RFKQIGINEMTDNPPPSTPSSSSASVAGH
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgcgtggaggtagctccggcggtaccggaactaccagtaatggtctcacctctaccgta
gacagtttacccggaaaaggccatcttcacactttggaaatcgagaatttcaaatcttac
aaaggaaagcatattatcggcccattcagcagatttactgctattattggaccgaatgga
tctggaaaatcgaatttgatggatgcaatttcctttgttctcggagaacggccaaccagt
ttgcgtgtcaagaaatatactgatctcattcatggagctccgattaacagaccagttgga
aagaaatgccgcgttacaatgaattacaaatatgcggacggaacgataaaagcttttgcc
agaggtgttaataacggaacttctgaaaactacctcgacggacagctagttaccaaagaa
gcgtatgctgctgagatggagagtatccagattttcatcaaagccagaaatttcctagtt
tatcaaggagccattgagagcatcgctatgaagaatccaaaagagcgaactcaacttttc
gaggagctctctcgctcctacgaattccagaacgagtatgaaaagttgaagaatgaaatg
acgaaggccgaagatgatactcaacacaatatgaacaaacgtagaggaattgctcaggag
aagagagaagccaagatggagaaggatgaggctgaaaagtatcaaacgatgaagaatgag
ttggctgccaaatcaactatgctctatcttcatcaactattccattgtgagcgattgatc
gacgagtctaaagagaagatcaacgagcagaaaaagatcattgccgcattggaaaccaca
aagactgcagaagagttgaagattcaagcagttcataccgaacacaagaaagtgcagaga
gaagttcaaaaactcaatcgaaagctggatagtcaagagtcagctctagcacaaaagcag
caggaaaggctctctttgaaggtggcagtggctcatgaattcaaaaagttggagtccgcg
aataaagcattgtctgccgcagaggcattggctgaaaatagtgcagctcagttggcagat
ctcaaaaagaggaaggctgatatggaaggacaaaaagttgcttatgaagctgaagttcag
ggaatgatggacggaggagacttgaatttatccgaagagcagcgtaacgaatatcaagag
ctcagaaatcttgctgatcaagagtcggcgctgattcaaagaaatcttttgactgctgta
caagtgttggaaggacacaaaagttgcttgaaccacgaacttcggaagcagaaggaaatg
caggaaagagttagacagaaggaagcagatgtccagagactcgagagacaaatcgcggca
ctcagcacgaaaatcgcggagaccgaagaagagcataaagctttggtgaaggctctgaag
aagttggaggactcggtggtcattgacaaatcggctatgggagatctcagcaaggaattg
attgctgttaaccgtcaactctcagatgcatccggtgactctgcagaaggagagagaaat
caacgacgtgtggaagcgataacaagtttgaagtcggcgtttccagaagctgtgtatgga
agactcgtcgatttgtgtcagccatcgcataaaagattcaatattgcaactaccaagatt
cttcaaaagcatatgaacagtattgtctgtgataccgaggagactgctcataaagctatt
gagttcttgaagacgaatcgttttgccacagaaaccttccttcccaatgacgctcttgtc
gtcaacccaatcaacgagaagcttcgcgaaattcgtcgtccagtcggtgtgaaactcgtc
ttcgatgtgatcaatgtccaaaatcaaaacgctcgaaaagcactgcaattcgtttgtgga
aactcgttggtttgtgaaaatcaggatgatgccaaagcactggcatatggtggaactgag
ctgaaggatcgttacaaggccgtttccatggacggaaccctcttccaacagtctggtgtt
ctatccggaggatctgcggatcttcgtcaaaaagccaagaagtgggatgagaaagtggtc
aagcagctccgcgagaaacgcgacaatttgaacgaaaagatcgccgatctccagaagcat
cgccgtcgtgaaattgaagttgaagctgaaagaggaaagattgctagcatcgaacaaaga
ttgattatgtggaagaatgagttgaagtctcttcagcagaatcatctgatgagacttcag
aatgagttggaagggttgaatgctgaagaggaacagattccgccgaaaatcgagcgctgg
caagaaaaggtccaggaaagccaagcggttgttcaaaatttggaaactgcgagtaacaaa
gtggctgatgagaaatttgccggtttttgccaacgccttggtattgaatccattcgagac
tacgagaaccgcgaattgcgtatccagcaggagattcgagataagattcgatcatttgac
gacgagctcgagaagttgaactatgaaattgacttcctgaccgaacaagatggcaacaaa
aaagttgccgatgaaaagaagaaggtcgctaaaattgatgcaacatataaggaaatgaaa
tcaaaggagaaagccgccaaaaacgccgaggagcaacacatcgcagcgaccgaggaagtg
aaggcggtattagaggagaaaaaagcgttggccgcgaagctcgaggcagaatggaatgaa
gctaaaaaggcatcacagtcatcgctgaaagagtatacaaaggctgagaagacgttggta
gccgtggaaagtctaatgaagaagaagcaatatgagaggcactcgctgcttcattctgtc
aaactgggacagctggcgttgcctttgaaatctggaatggagattccgaatagaatcgtt
tctatttttgttccaaaagctccagatgatatgtctgattctgattctcaaactgacggt
gctgctgatagaccaagtgtgtccgatgagcagattcaacgagagcagcacatcaaaatc
aactatgactcgttgccacatgactacaaagagatcgatgatgacgatggcgttcgacaa
gcgacgaatcgactcaatgtggaaatcgaagagttgcagaagaatgtgtcaaagatgaat
gcgccgaatttgagagccaaccagcggatggcagaggtcagagagcgagaagcagagtcg
tcggatcaattggaagcagcgagaaggaaagccaaggcgattcgacagaaattcgaaaga
gtcaaaaccgagcgttaccgtcgcttccaagacttcttcgaacctgtctccaacaacatc
gatgacatctacaagcatctgtctcgtaacacctcggctcaggcattcctcggtgctgaa
aacatggaagagccctatctagacggtatccaatacaattgtgttgcacctggaaagcga
ttccgtccgatggataacttatcgggaggagagaagactattgccgcactcgcactgctc
tttgctgtgcacggacgtaatccggcgccgttttttgtgttggacgagatcgacgctgcg
ttggataataccaacattggaaaggtggcttcctacatctgcgaatatgctcgtgatcat
atgcaaatcattgtgatctccttgaaagaagaattctacaacaaggccgactctctcatc
gggatcttcccatacccggccgcctgtaccacttccggcgtcctcacgttcgatctgact
cgattcaagcaaatcggaatcaacgagatgactgataatccacctccatccacaccaagc
tcttcgtcggcttctgtggctggtcattaa
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