Caenorhabditis briggsae (nematode): CBG_20900
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Entry
CBG_20900 CDS
T01054
Symbol
Cbr-xrn-2
Name
(RefSeq) Protein CBR-XRN-2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03008
Ribosome biogenesis in eukaryotes
cbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CBG_20900 (Cbr-xrn-2)
09123 Folding, sorting and degradation
03018 RNA degradation
CBG_20900 (Cbr-xrn-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbr03021
]
CBG_20900 (Cbr-xrn-2)
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_20900 (Cbr-xrn-2)
03009 Ribosome biogenesis [BR:
cbr03009
]
CBG_20900 (Cbr-xrn-2)
03016 Transfer RNA biogenesis [BR:
cbr03016
]
CBG_20900 (Cbr-xrn-2)
Transcription machinery [BR:
cbr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CBG_20900 (Cbr-xrn-2)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
CBG_20900 (Cbr-xrn-2)
Ribosome biogenesis [BR:
cbr03009
]
Eukaryotic type
Pre-60S particles
RNases
CBG_20900 (Cbr-xrn-2)
Transfer RNA biogenesis [BR:
cbr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
CBG_20900 (Cbr-xrn-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
CLIP1_ZNF
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
8573700
NCBI-ProteinID:
XP_045097166
WormBase:
CBG20900
LinkDB
All DBs
Position
II:complement(<11867154..>11870675)
Genome browser
AA seq
976 aa
AA seq
DB search
MGVPAFFRWLTKKYPATVVNANEDRQRGVDGRRVPVDCTQPNPNFQEFDNLYLDMNGIIH
PCTHPEDRPAPKNEDEMFALIFEYIDRIFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEMAEKAASIEEQRRRLIAEGIAVPQKKKDEEEAHFDSNCITPGTPFMARLADALRYY
IHDRVTNDPAWANIEIILSDANVPGEGEHKIMDYIRKQRGNPAHDPNTVHCLCGADADLI
MLGIATHEANFNIIREEFVPNQPRACELCGQYGHELKECRGAENDTDLGDEYCKPEQREK
NFIFLRIPVLREYLEKEMAMPNLPFQFNLERALDDWVFLCFFVGNDFLPHLPSLEIREGA
IDRLIKLYKEMVYEMKGYLTKDGIPELDRVEMIMRGLGKVEDEIFKRRQQDEERFKENQK
NKKARMQQYGRGRGGRGRGRGQPAYVPSHGILAPMSAPMHHSGESTRQMASDARQAAMQF
NATNDANAQAAANLKALLNVKGEQSPAEVAAQESRKRKAEQPIIITDEDEEPKDDIRLYE
SGWKERYYRAKFDVGSDDVDFRHRVAWAYVEGLCWVLRYYYQGCSSWDWYFPYHYAPFAS
DFETVGEFKPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQKLMTEDESPIIDLYPADF
RIDLNGKKYAWQGVALLPFVDEQRLLETLKSVYPTLTDEEKYRNTRGPNRIFIGRNHKSF
AFFQQVAESKSNDLVDLDPSLLNGVSGKISYDSTATAPGLPFPSPVSHEECQDLPTNCGI
CVLYEDPEYPANYVFPAVRLDGAKEAEKTLRPEDWNERRDGRFNPTIGFNRNAPRGGLDL
SGQRHINHHVRGAMYDRQGGNDNYRGGYRGGYQGGYDDRRGGRGGGGYRGGYNDSRPDFG
RNYAGREGGGPQHYHEHQPGGGHGRPHDQQPYQDNRRGGGYHRGGRGNGPTGYQRPPYRG
GRGRGGGGYQGNSSWR
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcattcttccgatggttgacaaaaaagtaccctgcaacagtagtgaat
gcaaatgaagatcgtcagagaggtgtcgatggtcgacgggtaccagtcgattgcactcaa
ccaaatccgaattttcaagaattcgacaatctatatctggatatgaatggtatcattcac
ccttgcacacatccagaagatcggcctgctccgaaaaatgaagacgaaatgtttgcactc
attttcgagtacatcgatcgtatcttctcaattgtcagaccgagaagacttctctacatg
gcaatcgatggagttgctcctcgcgcaaaaatgaatcaacagcgtagtcgtcgtttccgt
gccagtaaagaaatggccgagaaggcagcaagtatcgaagagcagagacgccgtctcatc
gcagaaggaattgccgttcctcaaaagaaaaaagatgaagaagaagctcacttcgatagt
aactgtattaccccaggaactccattcatggccagactagctgatgctctccgttattat
attcatgacagagtcaccaatgacccagcttgggctaacattgagattatcctctccgac
gccaacgttccaggagaaggagagcacaagatcatggattacatcagaaagcaacgtgga
aatccagctcacgacccgaacactgttcactgtctttgtggagctgatgccgatcttatc
atgcttggaattgctacccatgaggctaatttcaatatcatccgagaggagtttgtgccg
aatcaaccacgagcctgtgagctatgcggacagtatggtcatgagctcaaagagtgtaga
ggtgctgagaatgatacagacctcggcgacgagtattgcaaaccagagcaacgagagaaa
aacttcatcttcctgagaatcccagtgcttcgagagtatcttgaaaaagagatggccatg
ccaaatctgccattccagtttaatctcgagagagctctcgatgattgggtttttctttgt
ttcttcgttggaaacgatttcctgcctcatctcccatctcttgaaattcgtgaaggagcc
attgaccgtctaattaagctttacaaggaaatggtttacgaaatgaagggttatttgaca
aaagacggaatcccagagttggatagagttgagatgatcatgagaggattaggaaaagtt
gaagatgagattttcaaacgacggcagcaagacgaagagagattcaaagagaatcagaag
aacaagaaggcaagaatgcagcagtatggaagaggcagaggaggtcgcggtcgtggtcgc
ggacagccagcctatgtaccatcgcatggaatcctcgctccaatgtccgctccaatgcat
cattctggagaatcaacgagacaaatggcttcagatgcgagacaagctgccatgcagttc
aacgctaccaacgacgccaacgctcaagccgcagcaaatctcaaggcgttattgaatgtg
aaaggagagcagtcaccggcagaagttgctgcacaagaatcgaggaagcgtaaggctgag
caaccaataatcataactgatgaggatgaagagccgaaggatgacatccgtctctacgag
tcaggatggaaggaacgttattatcgagcgaaattcgatgtaggatctgatgacgtggat
ttccgacatcgtgtcgcctgggcttacgttgaagggctttgctgggtgctgagatattat
taccaaggatgttccagctgggattggtacttcccgtatcactatgctccattcgcaagt
gacttcgagaccgtcggagagttcaaaccagacttcacaaggccaacaaagccattcaac
cctctggagcaacttatgagtgtctttccagccgcttccaaacaacatctaccagtcgaa
tggcaaaagctcatgactgaagatgaatccccaatcattgatctctatccagcagacttc
cgtattgatctaaatgggaagaagtatgcgtggcagggagttgctctactcccattcgtc
gatgaacaacgtcttctggagactctcaaatcggtgtatccaacgttgactgatgaggaa
aagtatagaaacacacgcggtcctaaccgtattttcatcggaagaaatcacaaatccttc
gctttcttccaacaagtcgccgaatcgaaatccaatgatctcgtagacttagatccatcg
cttctcaacggagtcagcggaaagatctcctacgattcgacggccactgctccaggactt
ccattcccatctccagtcagccacgaagagtgccaagacttgccgacgaactgtggaatc
tgcgttctctacgaggatcccgaatacccggccaactacgttttcccagctgtccgtctc
gacggtgctaaggaagccgagaagacgttaagaccagaagactggaatgagcgacgtgat
ggtcgtttcaacccaacgattggattcaaccggaatgctccacgtggcggtcttgatctg
tccggtcaacgtcacatcaatcatcatgtcagaggtgctatgtacgatcgtcaaggtggc
aacgacaactacagaggaggttatcgtggagggtatcaaggaggatatgacgatagaaga
ggtggaagaggaggtggtggttatcgtgggggatacaacgatagcaggcctgatttcggt
agaaattatgcaggaagagaaggcggaggtcctcaacattatcacgagcaccagcccgga
ggtggacacggcagaccacatgaccagcagccatatcaagacaatcgtcgtggtggtgga
tatcacaggggaggacgtggaaatggacctacaggataccaacgaccaccgtatcgtgga
ggtcgcggaagaggcggaggaggatatcaaggcaactcttcatggagataa
DBGET
integrated database retrieval system
