KEGG   Caenorhabditis briggsae (nematode): CBG_21225
Entry
CBG_21225         CDS       T01054                                 
Symbol
Cbr-lis-1
Name
(RefSeq) Protein CBR-LIS-1
  KO
K16794  platelet-activating factor acetylhydrolase IB subunit alpha
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr00565  Ether lipid metabolism
cbr01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09100 Metabolism
  09103 Lipid metabolism
   00565 Ether lipid metabolism
    CBG_21225 (Cbr-lis-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cbr03036]
    CBG_21225 (Cbr-lis-1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cbr04147]
    CBG_21225 (Cbr-lis-1)
Chromosome and associated proteins [BR:cbr03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    CBG_21225 (Cbr-lis-1)
Exosome [BR:cbr04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   CBG_21225 (Cbr-lis-1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_EML WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_Nup120_160 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_SCAP WD40_RFWD3 WDR90_beta-prop_4th Beta-prop_Vps41 LisH Beta-prop_NWD2_C Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_WDR75_2nd LisH_PAC1 Beta-prop_DCAF12 Beta-prop_RIG_1st WD_LRWD1 KNTC1_N PROPPIN EAD1 LisH_2 SutA-RBD
Other DBs
NCBI-GeneID: 8584821
NCBI-ProteinID: XP_045097220
WormBase: CBG21225
LinkDB
Position
III:complement(12908660..12915132)
AA seq 390 aa
MSLSERQREEINRAVAEYLQNNGYSEAFNMLLKEASLSENDIKPLGGILEKKWTTVLRLQ
RKVNDLEAKLLESQQEINHGAPTRDKRQAADWIPRPPETQKLIGHRLPVTRVIFHPLWTI
MASCSEDATIKVWDYETGQLEKTLKGHTDAVNDIAIDAAGKQLVSCSTDLTIKLWDFGQS
YDCLKSLKGHEHTVSSVTFLPTGDFVLSASRDHTIKQWDISTGYCVFTFRGHNDWVRMIR
ISHDGTLFASGSLDQTVSVWSLPRKQRNWYFEIMSMRWSVSKPEGNSTHILFSGSRDRSI
KAWNISTGEVIFTLSAHENWVRGLAFHPKGKYLVSVADDKMMRIWELSAQRCMKAIEAHE
HFVSTVAFHQTNPYVITGSVDMSCKVWECR
NT seq 1173 nt   +upstreamnt  +downstreamnt
atgagtttgtcagagaggcaacgagaggaaattaatcgagcagtggccgaatatctgcag
aacaatggatactccgaggcgttcaacatgcttctcaaggaggcgagcttgagcgaaaac
gatatcaaaccactgggcggcattctggagaagaagtggactacggtacttcgacttcaa
cgcaaagtcaacgatttggaggcgaaactgctcgaatcacaacaggaaatcaatcatggc
gcgccgacgagagacaaacgacaggcggccgactggattccccgtccaccggagacgcag
aagctcatcggacatcgtcttccggtcacccgcgtcatttttcatccgttatggaccatt
atggccagctgctcagaggacgccactattaaggtatgggactacgaaacgggacaactg
gagaagacactcaagggacacacggatgccgtcaacgatattgctatcgatgcggctgga
aagcaattggtatcctgctcgacggacctgacaatcaaactgtgggactttggtcagtcg
tacgattgtctgaaatcgctgaaaggacacgagcatactgtatcgtcggtcaccttcctg
ccaacgggcgattttgtgctctccgccagccgggatcatacgattaagcagtgggatatc
tccaccggctactgtgtgttcacattccgcggccacaacgattgggtccgaatgattcgt
atctcgcacgacggaacgctcttcgcatcgggaagtctggatcaaacggtttccgtatgg
tctttgccacgaaagcagcgaaattggtacttcgagatcatgagcatgcggtggagtgtg
tcgaaacccgaaggcaattccacacacattctgttcagtggcagtcgtgacagaagcatc
aaagcgtggaatatcagcactggcgaagtgattttcaccctatcggctcacgagaattgg
gttcgcggattggcgttccatccgaagggaaagtatttggtatcagtggccgatgataag
atgatgcgaatctgggagttgagtgctcaacggtgtatgaaggccatcgaggcacacgag
cacttcgtttcaacagttgcattccaccaaacgaatccatacgtgatcactggaagtgtc
gacatgtcatgcaaagtttgggagtgccgctga

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