Caenorhabditis briggsae (nematode): CBG_22089
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Entry
CBG_22089 CDS
T01054
Symbol
Cbr-npp-13
Name
(RefSeq) Protein CBR-NPP-13
KO
K14309
nuclear pore complex protein Nup93
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CBG_22089 (Cbr-npp-13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_22089 (Cbr-npp-13)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
CBG_22089 (Cbr-npp-13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
Nup84_Nup100
Motif
Other DBs
NCBI-GeneID:
8580866
NCBI-ProteinID:
XP_002638871
WormBase:
CBG22089
UniProt:
A8Y1I0
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Position
I:2248568..2267619
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AA seq
785 aa
AA seq
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MLHFEEILGRVDHQGLTKLFGASLFQSQDVDTSHNFTVRNGVEHELCGILGGSEGNWQRD
AQPVQKKMMFGERGIQIPSRQAEAHSSEETFTEDGIVEIPQAVIDDIDEEELDEDILRVK
VETDRAFFNHMLLARPAAVPMTPAQAMERDDLPTGNGTFVNKNISDRRELLFGDKLHKYL
KSQGKKSLVELMKEAVEESGTDGALADVWNDVTSVLNRKTVASRDDVTTTANLLEDACRY
LQKVFTDHMQTVVERNLEIAERGGIPGKRGLVNAFLKVGTEEPFQPEDDSIDGMPTWQVT
YHCVRAGDMQAAAETLNRLKSFPQCATLVASLNHVAKHKKLDAELKKKLKVEWRHNVGHT
KDKYKRALYAALLGGLESAALADTLENWIWFKLYPLHVDPQLTPLLFQEVQKAVSIDYGE
QYFMSNGPSEFQYFFTALWLSGQFERAIYLLHECGQRVDSVHVAILAHKLGYLRMSVKST
DEMLVVDPNDATKCHLNLARLIVAYTKNFELIDVPRSLDYWFLLKGISTPTGSDVFEMAV
SRSVYLTGQCDAILGTLTPDGRREKGLIDEYLDDPSEVINRVASDTELTGEWDQAVSLYL
LASKSTNAAKLLSSEISETLRADNKEKIGELVTVAEQFKRVQKGCQAAEYATLSLLVDLA
VLFDHCRNDNADTAYGLVFDLRLIPTEPDQVTVIVNEFHMVPQKVREVLPDMCLHLMKCL
VDHCIRQSTSLANRGANAANTSMFSSSNRYVKQIKAIVLYSATVPYKFPTHVTSKLLQLQ
ASLGF
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgctgcatttcgaagaaattctgggtcgagtcgaccatcaaggcctcaccaaactcttc
ggagcgtcgcttttccaatcacaagacgtcgatacctctcacaatttcacagttcgaaat
ggtgtcgagcacgagttgtgcggtattttgggcggttccgagggcaattggcagcgtgac
gctcagccggtgcaaaagaagatgatgttcggagaacgaggaattcagattcccagccga
caagccgaggcacactccagcgaagagacgttcacagaggacggcattgtcgagattcca
caggctgtcattgatgatatcgatgaggaggagctcgacgaggacattctccgtgtcaaa
gtggaaacggaccgcgcgttcttcaaccatatgcttctggcacgtccggcggccgtacca
atgacaccagcacaagccatggagcgagatgacctacccacgggaaacggaacattcgtc
aacaagaacatcagcgatcgtcgagagcttcttttcggcgacaaactacacaaatatctg
aagtctcaaggcaaaaaatcgctagtcgagctgatgaaagaagctgttgaggagtctgga
acagacggtgctttggccgacgtctggaacgatgtcacatcggtgctgaatcgaaaaacg
gtggcgagtcgagacgacgtgacgacgacggcgaatcttctggaggatgcgtgtagatat
cttcagaaagtgttcactgatcatatgcagactgttgttgagaggaatttggaaatcgcg
gagagaggaggaattccaggcaaacgaggactggttaatgcgtttttgaaggtcggcacc
gaagagcccttccaaccagaagacgacagtatcgacggaatgccaacgtggcaagtgaca
tatcattgtgtccgtgctggagacatgcaagcagccgccgagaccctcaaccgactcaaa
tcgttcccacagtgcgcaactctggtcgcctcgctgaaccacgtggcaaaacacaagaaa
ttggatgcggagcttaagaaaaagctgaaagtcgagtggcgtcacaacgtcggccacacc
aaggacaagtacaagcgtgctctctacgccgcccttctcggcggactcgaatccgcggct
ctcgctgatactctagagaattggatctggtttaagctatacccacttcacgtcgatcca
cagttgacgccgttgctgttccaggaggttcagaaagccgtttcgattgattatggagag
caatacttcatgtcaaatggcccctccgagttccagtacttcttcacggctctctggctt
tctggacaattcgagagggctatttatctccttcacgagtgcggacaacgagtggatagt
gtacacgtggcgattctcgcacacaagttgggatatcttcggatgtcggtcaagtcgacc
gatgagatgttagtcgtcgacccgaacgacgccacgaaatgtcatctgaatctcgctcgg
ctcatcgtcgcctacacgaaaaactttgagctgatcgatgtgccacgatcgctggactat
tggttcttgcttaagggaatctcgacgcctacaggatccgacgtcttcgagatggcagtg
agccggtcggtgtatttgactggacagtgtgacgcgattctgggaacactgacgccggat
ggacgaagagagaaggggctgattgatgaatacctcgacgatccatcggaagtgatcaat
cgtgtggcgagtgacacggaactcaccggtgaatgggatcaagccgtcagtctctatctg
ctagcatccaagtccacaaacgccgccaaactgttatcatcggaaatcagtgagacactc
cgtgcggataacaaggagaagattggcgagctggttacagtagctgagcaattcaaacgc
gttcaaaagggatgtcaagcggctgagtatgccacgctgtcgttgttggtcgatctcgcg
gtgctgtttgatcactgcagaaatgataacgctgataccgcttatgggttagtttttgat
ctccgcctaatcccaaccgagccggatcaagtgaccgtaatcgtcaacgagttccatatg
gtaccacagaaggttcgagaagtgcttccagacatgtgtctccacctgatgaagtgcctc
gtcgatcactgtattcgtcagtcgacgagtctcgcgaatcgtggcgccaacgccgccaac
acctcaatgttctcctcgtcgaatcgctatgtgaagcagatcaaggcaatcgttttgtac
tcggcaactgttccatacaagttcccaacacatgtgacgtccaaacttcttcaattgcaa
gcatctcttggattctga
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