Caenorhabditis briggsae (nematode): CBG_22190
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Entry
CBG_22190 CDS
T01054
Name
(RefSeq) Protein CBG22190
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cbr03016
]
CBG_22190
Enzymes [BR:
cbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CBG_22190
Transfer RNA biogenesis [BR:
cbr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CBG_22190
Prokaryotic type
tRNA splicing ligases
CBG_22190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
8580951
NCBI-ProteinID:
XP_045097507
WormBase:
CBG22190
LinkDB
All DBs
Position
I:complement(2742663..2746575)
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AA seq
457 aa
AA seq
DB search
MPRTFEEECGFINRLTETKFQIVKGFVPNMNVEGRFYVNSRLEQLMFDELKFSCDGQGIG
GFLPAVRQIANVASLPGIVGHSIGLPDIHSGYGFSIGNIAAFDVGNPEAVISPGGVGFDI
NCGVRLLRTNLFEEDVKPVKEQLTQSLFDHIPVGVGSRGAIPMLASDLVECLEMGMDWTL
REGYSWAEDKEHCEEYGRMLQADASKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDK
HAASTMGIDQEGQVGKNYFAGMAAAANFAWVNRSCITFCVRNAFQKTFGMSADDMDMQVI
YDVSHNVAKMEEHMVDGRPRKLCVHRKGATRAFPAHHPLIPVDYQLIGQPVLIGGSMGTC
SYVLTGTEQGMVETFGTTCHGAGRALSRAKSRRTITWDSVIDDLKKKEISIRIASPKLIM
EEAPESYKNVTDVVDTCHSAGISNKAVKLRPIAVIKG
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgaacattcgaagaggagtgcgggttcatcaatcgtctcacggagaccaaattc
caaattgtcaaaggattcgtgccgaatatgaatgtagaggggcggttctatgtgaatagt
cgactcgaacagctcatgttcgatgaattgaagttctcgtgtgatggacagggaatcggt
ggattcttgccggctgtcaggcaaattgccaacgtggcatcgctgccggggattgtggga
cactcgatcggtctgcctgacatccactctggctacggtttctctatcggcaacattgcc
gcattcgacgtcggcaatccagaagccgtcatctccccaggaggcgtcggattcgatatc
aactgtggagtacgtcttctgcgaacgaatctcttcgaagaagacgtgaaaccggtgaaa
gagcaactcactcaatcgcttttcgatcatattccggttggagtcgggtcccgaggagcg
attccaatgctagcgtcggatttagtagaatgtttagagatgggaatggattggacacta
cgagagggttattcatgggcagaggataaggaacactgtgaggagtacggtagaatgttg
caagccgacgcgtcgaaagtttcgatgagagccaagaagcggggattgccacagttggga
accctgggagccggaaatcattatgcggaaattcaagtggttgatgagatttatgataag
catgctgccagtacaatgggaattgatcaggagggacaggtgggcaaaaactactttgcc
ggaatggcagccgctgcgaatttcgcttgggtcaaccgctcgtgcatcacattctgtgtc
cgtaacgccttccaaaaaacctttggaatgtcggcagacgatatggatatgcaagtgatt
tatgatgtatctcataatgttgcaaaaatggaggagcatatggttgatgggcggccgagg
aagctttgtgttcatcggaaaggagcgacaagggcgttcccggcacaccatccactgatt
cccgtggattatcagctgattggacagccagtgttgattggtggaagtatgggaacgtgt
agttatgtgctaactggaactgagcagggaatggtggagacgtttgggaccacgtgtcat
ggagcgggtcgcgctctctcccgtgccaaatctcgtcgtacaatcacttgggattcggtg
attgacgatctcaaaaagaaggaaatttccatcagaatcgcctcacccaaactgatcatg
gaagaagcgccagaatcgtataagaatgtcactgatgtcgtcgacacgtgtcactcggct
ggtatcagtaataaggctgtcaaattgagacccattgctgttattaagggataa
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