Caenorhabditis briggsae (nematode): CBG_22293
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Entry
CBG_22293 CDS
T01054
Symbol
Cbr-xnp-1
Name
(RefSeq) Protein CBR-XNP-1
KO
K10779
transcriptional regulator ATRX
Organism
cbr
Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cbr03000
]
CBG_22293 (Cbr-xnp-1)
03036 Chromosome and associated proteins [BR:
cbr03036
]
CBG_22293 (Cbr-xnp-1)
Transcription factors [BR:
cbr03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
CBG_22293 (Cbr-xnp-1)
Chromosome and associated proteins [BR:
cbr03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
CBG_22293 (Cbr-xnp-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Motif
Other DBs
NCBI-GeneID:
8581035
NCBI-ProteinID:
XP_002639041
WormBase:
CBG22293
UniProt:
A8Y201
LinkDB
All DBs
Position
I:3167240..3171735
Genome browser
AA seq
1333 aa
AA seq
DB search
VIDDEDLQLAAQIEKERKERRAQKLKEKRLKEGKTPKKTPAKKRPPKKEEDDSDEEEESP
KKSAKKKQEKARKRRKSSSSEEVEDEEERRSSRKKKTDKKKKKAESSESEESSDEEEEVK
KPKKKTPSKKNRKAESSEEEESDEAPKKQKKSMSQKKKRVAKESESDEEEEKLERKKKSQ
KKKHQKESSDEEEEEEKVEKKKKKAQKRRQKESSSEEEEDEEKKVQKKKQKEPSSEEEEG
EESENEPVKKSDSESDEVTMPKLKKNQSAIVDESGESDLEVMPKPRKRGAVVISESDEEK
PMKKKVESEDESSDDDRKVKKNNKKKTVSDSEDGEFSDASINVTRKKRGSKKEKPEKKKK
GIIMDSSDLAKETIDAENAEKERRKRLEKKQKEFNGIVLEEGEDLTEVLTGTSSQRKLKS
VVLDPDAASEDPKTPVEVHQSLVSILKPHQAHGVQFMYDCAFESIERLNTEGSGGILAHC
MGLGKTLQVITFLHTVMMHPKIGEKCRRVLVVVPKNVIINWFKEFQKWLYDNDEELDTIE
VNELDSYKTVEERRRVLQAWHRSTDPSVMIIGYDMFRILTVEDDPKKKKTKLSRKMSKAK
EDFRKYLQDPGPDMIVCDEAHKLKNDDSALSKCMVKIRTRRRICLTGTPLQNNLMEYHCM
VNFVKPGLLGTKTEFANRFVNIINRGRTKDASALEVSFMKRRCHVLYDHLKKCVDRKDYR
VLTEAIPPKQEYVINVRLTERQCELYKAFLSDVVGDTGLSKRLLPDYHMFSRIWTHPHQL
IIHEQRMERERVMKEEQEEEEAFIDDDESEPEESVVSLSSESEESFLASDDDEDSGKKKK
NKNKKNRKSSPPARKSRRAGGADEEEDDAAMNILQQGIRASRRLAGEDVDERECDTPPEY
TGWFSKLGLCSEEDKDDFSLSNKLVLLMAIIKKCEEIGDKLLVFSQSLESLALIRRMLEY
MAGTGQWFSDDHEALNAEGETWSWLEGEDYMTIDGSVQSVKRDAVQTQFNDPENLRARLM
LISTRAGSLGTNMVAANRVVIFDACWNPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEE
RIYKRQVTKESTSMRVVDEAQIQRHYLGHDLTELYQFTPAAYDPDVEIACAPPKDRLLAD
VIHQNQFAVVDYIEHDTLFANVEDEKLTEQEMKDAWTDYEKDKAGVPQRLPYDPSALRGI
GLNGMIVGPHMQAMLQRQQTEIMHVENLQHDVLFKELNKMRTKDSSTALKIVLLRTLLEQ
ILPYIPQQMRGGMSEFNTHFIRLAHDADRRGETQADLLRKSLESFRTVIKMVRPIPQCAE
PLARIQRAYPYLF
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
gtcatcgatgatgaagatctccagttggccgcccaaattgaaaaggagcgcaaggagaga
cgagctcagaagctgaaggaaaagcggttaaaagaaggaaaaactccaaagaagacacct
gccaaaaaacgaccaccaaaaaaagaggaggatgacagtgatgaggaagaagaatctccg
aaaaaatctgctaaaaagaaacaagagaaggccagaaagagaagaaagtcaagctcttct
gaagaggtggaagatgaggaggagagaagaagttccagaaaaaagaagacagataagaag
aagaagaaggcggaatcttctgaatccgaagagtcttctgatgaggaggaagaagtgaag
aaacctaagaagaagacgccatcgaagaaaaacagaaaggcagaatcatcggaggaggag
gagtcagatgaagcaccgaagaagcagaagaagtcgatgagtcagaagaagaagcgcgtt
gccaaggagtcggagtcagatgaagaggaggagaagttggaaaggaagaagaagtctcag
aagaagaaacatcaaaaggaatcttctgatgaggaagaagaagaggagaaggtggaaaag
aagaagaagaaggcacagaagagaaggcagaaagaatcatcttcggaagaggaggaagat
gaggaaaagaaggtacagaagaaaaagcagaaggaaccatcttcagaggaagaagaaggg
gaggagtctgaaaatgagccagtgaagaagtccgattctgaatcggacgaagtgacaatg
ccaaaattaaagaagaatcaatctgcgattgtggatgagtcgggagagtctgatctcgaa
gtgatgccaaagcctcggaagagaggagccgtagtgatctcggagtcggatgaggagaag
ccaatgaagaagaaagtggaatctgaagatgaaagttcggatgacgataggaaagtcaaa
aagaataataagaagaagaccgtttccgactcagaagacggagaattttccgatgcgtcg
atcaatgtcactcgcaagaaacgtggatcgaaaaaggagaagccagagaaaaagaagaag
ggtatcatcatggacagctcggatcttgccaaagagaccatcgacgcagagaatgcagag
aaagaacgcagaaagcgtctagagaagaagcaaaaagagttcaatggaatagtgctggaa
gagggagaagatctcacagaagttctcactggaacatcttctcagagaaagctcaagtcg
gtggttttggatccagatgcggcaagtgaggatccaaagactccagtagaggttcaccaa
tcgctggttagcattttgaagcctcatcaagcgcacggagttcagtttatgtacgattgt
gcattcgaatcgatagagcgtctgaatacagaaggatccgggggtattctggcacattgc
atgggtctcggtaaaactcttcaagttatcacattccttcacactgttatgatgcatccg
aagataggagaaaagtgtcgacgggtgttggttgttgtgcccaaaaacgttattatcaat
tggtttaaagagttccaaaagtggttgtatgacaatgacgaagaactagacaccattgaa
gtcaacgagttggattcatacaagactgtcgaggagagaagacgtgtgcttcaggcatgg
cataggtctacagatccaagtgtgatgatcatcggatacgatatgttccgtattctgaca
gtggaggatgatccgaaaaagaagaaaaccaagttgagcagaaaaatgtccaaggccaaa
gaggacttccgaaagtatcttcaggatccaggaccggatatgatcgtttgtgacgaggct
cacaaactgaagaacgatgattcggcgttgtcaaagtgtatggtgaagattcggacgaga
cgacgaatctgtttgacaggaaccccactgcagaataatctcatggagtatcactgcatg
gtgaactttgtgaagccaggattgctgggaacgaaaaccgagttcgccaatcgatttgtg
aatattatcaatcgaggacgtaccaaggatgcgtcggctctcgaagtgtcattcatgaag
cgtcgttgccacgtgttgtatgatcacttgaagaagtgtgtggatagaaaagactatcga
gtcttgacagaagccattccgccgaagcaagaatatgtgatcaacgtgcgtcttaccgag
agacaatgtgaactttataaagccttcctgagcgatgtcgttggcgatactggactctcg
aaacgtcttctaccggattatcacatgttctctcggatctggacccatcctcatcagctt
atcattcatgagcaacgaatggaaagagaacgagtgatgaaagaggagcaggaggaagag
gaggccttcattgatgacgacgaatctgaacccgaggaatctgtagtgagcctctcatca
gaatcagaagaatcatttttggcgtctgacgatgatgaggattcggggaagaagaagaag
aacaagaataagaagaatagaaagagctctccgcctgcacgcaaatcgagacgagctggt
ggagctgacgaagaggaggatgacgctgctatgaatattcttcaacaaggaatccgtgcg
tcacgtcgtctggcgggagaggatgtcgatgagcgtgagtgtgatacacctccagaatac
actggatggttttccaagttgggattgtgcagtgaagaggataaagatgacttctcgttg
agcaacaaacttgttcttctcatggcgattatcaagaagtgcgaggagattggagacaag
ttactcgttttctcgcaatcccttgagtcattggcattgattcgaagaatgcttgagtac
atggcaggcactggtcaatggttttctgatgatcacgaagctttgaacgccgaaggagag
acatggtcatggctagaaggagaagactatatgactattgatggatccgtgcagtctgtg
aaacgagatgccgtacagacacaattcaatgatccagagaacttgagagctcgtttgatg
ctcatttctactcgcgccggatcgcttggtaccaacatggttgccgcaaatcgtgtcgtc
atcttcgacgcttgctggaatccatctcacgacactcaatctctgttccgtgtctatcgt
ttcggccaaacgaaacccgtctatatctaccgattcattgctcagggaacgatggaagaa
cgtatttacaaacgacaggtcaccaaagaatccacgtcgatgcgtgtggtggatgaagca
cagattcaacggcattatctcggtcacgatttgactgaactctatcaattcacacctgcc
gcttatgatccggatgttgagatagcgtgtgctccgccgaaggatcgtttgctggctgat
gtgattcatcagaatcaattcgcagtcgtcgactacattgagcatgacacactgtttgcc
aacgtggaagacgagaagctcaccgagcaagagatgaaggacgcctggactgactatgag
aaggacaaggctggcgtcccgcaacgtcttccatacgatccatcggcgctgcgtggaatc
ggtctgaatggaatgatcgtcgggccacacatgcaagctatgctccaacgacaacaaaca
gagataatgcatgtcgagaatctacagcacgatgttctgttcaaggaattgaacaagatg
cgaaccaaggatagtagtaccgcgctgaaaattgtgcttcttcgaacgcttctcgagcaa
attctgccgtacataccacagcaaatgcgtggtgggatgagcgaattcaacacacacttc
attcgtttggcacatgatgccgaccgtcgcggtgagactcaagcagatttgctccgaaag
tctctggaatccttcagaactgttatcaaaatggtgcgtcctattccccagtgtgctgag
cctcttgctcgtattcaacgagcctatccttatctcttc
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