KEGG   Caenorhabditis briggsae (nematode): CBG_22442
Entry
CBG_22442         CDS       T01054                                 
Name
(RefSeq) Protein CBG22442
  KO
K11984  U4/U6.U5 tri-snRNP-associated protein 1
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CBG_22442
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cbr03041]
    CBG_22442
   04121 Ubiquitin system [BR:cbr04121]
    CBG_22442
Spliceosome [BR:cbr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    CBG_22442
 Complex C
   U4/U6.U5 tri-SnRNP specific factors
    CBG_22442
Ubiquitin system [BR:cbr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    CBG_22442
SSDB
Motif
Pfam: SART-1 HIND
Other DBs
NCBI-GeneID: 8577697
NCBI-ProteinID: XP_045097565
LinkDB
Position
V:complement(2940450..2947827)
AA seq 831 aa
MSSKYAKKRKQLDDDTSEASRSRRDSSRSPSPSRSKRSAKQREPENNGEPAESMSIEETN
KLRASLGLAPLETNDNKERDADDGTNEKIYNEDGFEFRHRKAENLADKKKEKEIKEKLEV
AKQKRDVYSKVLKARKLADSDDEDGAAGFVERMRKKEDEAKKAAERAAAFDQLDEELGVS
ATVEKARKQKRPKGPKGPSATAGMVIGHGREAFVEGDQILVLQDKGILDDGDEVLVNPNM
LDDERHVRNVELRKRKDPNRNFDEDVDEFGNLKNFGVLAKYDETLEGEQKKQFRLDETGG
VDLEEEKREMEAFRRMKMAGKRLESLETKKYELASEFYTQDEMTQFRKVKKGKKEKNIRK
RKVLKASDLVPVEKAGQSFGRRRRDSDETQDDKEKVEEDVKMEEEGELPEAPEDKKWKKA
MTGNGVDVQRLLKLRASTRQKDSDEDSDDDLMFTGGVDLTGVVIDDDAEDELHSILAKTR
KVKQIDGKEDDVGKRVQSMLTSHGGKMELDDEDVKPTVKEGQLFIDSTTEYCRHVGEITT
LGIGGNRNVDVSEVKKVVKEEVPEEETDGFEQWKRAKVDKDIKEKEKRKFRDQGGWLAAG
KPMDSNIRIDSDDEDALEEAKKRKWSDEEDSEDDEEKDEYAPALGREVDVSKGVGQMLKL
AGQKGYLQNPNAKSHSGPSLDHLKNKASHRVDGSRLCPDVHKSEFLTQTTETPKKRTVSN
RRIVVQRCRSLRRRTTNQMSISVMWIGKDVIWMRKTPTESSLISIFHGRNPGKKQLEKRA
NRKDKEERMLKTNSYDTPLGTLSKQLKKQKQLSTPYLVLSGSTDHSSLKKE
NT seq 2496 nt   +upstreamnt  +downstreamnt
atgtcatctaaatacgcgaaaaagcgaaaacaactcgacgacgacacttccgaagcgagc
agaagtcgtcgtgactcgtccagatcgccatctccttcaaggtcgaaaaggtcggcaaaa
caacgagaaccagagaataatggagagcctgccgaatccatgtcgatcgaggagacgaac
aagcttcgtgcctctctaggcctggcacctctggaaaccaatgataacaaggaacgcgac
gccgacgatggcaccaacgagaagatttataacgaagacgggttcgagtttcggcatcga
aaagccgagaatctagccgataaaaagaaggaaaaggagatcaaagagaagttggaagtg
gcgaaacagaagagagacgtctactcgaaagtgttgaaagccaggaagctggcggactct
gatgatgaggatggtgctgctggattcgtggagaggatgcgaaaaaaggaagacgaggct
aagaaagcggcggaacgggcggccgcgtttgatcagttggatgaagagctgggagttagt
gcaacggtggagaaggccaggaaacagaagagaccaaagggaccgaaagggccatcggcc
acggctggaatggttattgggcatggaagagaggcgtttgtggagggagatcagattttg
gttctgcaggataagggaatccttgacgacggtgacgaggtgctggtcaatccgaacatg
ctggacgacgagcgacacgttcggaatgtggagcttcggaagcgaaaagatccgaatcgc
aatttcgacgaggatgtcgatgagtttggcaatctcaaaaactttggagtgctcgcgaag
tacgacgaaacacttgaaggcgaacagaagaagcaattccggctggacgagacgggcggt
gtggatctagaagaggagaaacgagagatggaagcattccgacgcatgaaaatggccggg
aagcgtctggagagtttggaaaccaaaaaatacgaattggccagcgaattctacacccag
gacgaaatgacacagttcagaaaggtcaagaagggcaaaaaagagaagaatatcaggaag
aggaaggttctgaaggcgtcagacttggtgccagtcgagaaggccgggcagagttttgga
agacgtcgaagggattctgatgaaactcaagacgataaggagaaagtagaggaagacgtg
aagatggaggaagaaggggagcttccggaagcgccagaagacaagaaatggaagaaggcg
atgactggaaacggtgtggatgtgcaacgtcttctgaagcttcgagcatcaacacgtcag
aaggattcagatgaggattctgacgatgacttgatgttcactggaggcgtggatcttact
ggcgtcgtgattgacgatgacgctgaagacgagcttcactcgattctggcgaagacgcgg
aaagtgaaacagattgatgggaaagaggatgacgttgggaaacgagtacagagtatgctg
acgagtcacggaggcaaaatggaactggacgatgaagacgtcaagccgacggtgaaggag
ggacaactattcatcgactccacgacggagtactgtagacacgtgggagaaattacgacg
ttgggaattggtggaaaccggaatgtcgatgtgtcggaggtcaagaaggtggtgaaggaa
gaagtaccagaggaggaaacggacggttttgagcaatggaaacgcgcgaaagtggataag
gatatcaaggagaaagagaaacgaaaatttagagatcaaggaggatggctggcggctgga
aaaccaatggactcgaatatccgaatcgatagtgacgatgaggatgcgttggaggaggcg
aagaagaggaaatggtcagatgaggaggattcagaagacgacgaggagaaggacgagtac
gcgccggcgcttggaagagaagtcgatgtgtcgaagggcgttggtcagatgctcaagctg
gccggacagaagggatatcttcagaatccgaatgctaaatcgcattcgggaccatcgctg
gatcatttgaagaacaaggcatcgcatcgggtggatgggtctagattatgtccagatgtc
cacaaaagcgaattcctgacccagacgaccgaaacgccaaaaaagcggaccgtctccaat
cgcagaatcgtggtccaacgatgccgttcgctgagaagacggactacaaaccagatgtca
atatcagttatgtggatcggaaaggacgtgatatggatgcgaaagacgcctacagagagc
tctcttataagtatattccacggtcgtaatccgggtaagaagcagttggagaagcgagcg
aatcgtaaggataaggaggagaggatgttgaagacgaacagctacgacactccgctcgga
acgctgagcaagcagctgaaaaagcagaaacagctctccacaccgtacttggtgctgtcc
ggatccactgatcactcgagcttgaagaaggagtga

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