KEGG   Caenorhabditis briggsae (nematode): CBG_22959
Entry
CBG_22959         CDS       T01054                                 
Name
(RefSeq) Protein CBG22959
  KO
K10756  replication factor C subunit 3/5
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03030  DNA replication
cbr03410  Base excision repair
cbr03420  Nucleotide excision repair
cbr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CBG_22959
   03410 Base excision repair
    CBG_22959
   03420 Nucleotide excision repair
    CBG_22959
   03430 Mismatch repair
    CBG_22959
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cbr03032]
    CBG_22959
   03036 Chromosome and associated proteins [BR:cbr03036]
    CBG_22959
   03400 DNA repair and recombination proteins [BR:cbr03400]
    CBG_22959
DNA replication proteins [BR:cbr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    CBG_22959
  DNA Replication Termination Factors
   ELG1-RFC complex
    CBG_22959
Chromosome and associated proteins [BR:cbr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    CBG_22959
DNA repair and recombination proteins [BR:cbr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     CBG_22959
  Check point factors
   HRAD17(Rad24)-RFC complex
    CBG_22959
SSDB
Motif
Pfam: Rep_fac_C Metallophos AAA DNA_pol3_delta2 Rad17 RuvB_N AAA_24 AAA_22 AAA_30 AAA_11 AAA_14 AAA_16 AAA_19 AAA_5 SLFN-g3_helicase AAA_assoc_2 DUF815 RCF1-5-like_lid AAA_7 DEAD ResIII AAA_2 ATPase_2 PhoH Mg_chelatase AAA_28 AAA_25 ABC_tran
Other DBs
NCBI-GeneID: 8585038
NCBI-ProteinID: XP_002643044
WormBase: CBG22959
UniProt: A8Y3K6
LinkDB
Position
III:13976816..13986982
AA seq 551 aa
MSIEKKVFDVQHFCKRHLQIKNDQIYTKFELFSLIDLIIDEFRKEPTLAEISPPVRIVGD
IHGQHDDLVRLLNCKNEGNTASIDDRKPSYAFSTKKIPNFQNFVFQILFPKQYVLLRGNH
ETKVINFRYGFRHEILRRLTSKRDAQEVWERFNDAFSFMPLACLVGHKILCMHGGISPDL
VSLDAIRMIQRPLIDVNHNRLAQDLLWADPEDFERMLPSTTVVSNLPWVEKYRPSKLNEL
VAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARKMYHPSKMSSMVLELNASD
ERGIDVVRNTIVNFAQTKGLQAFASASDKDSVPFKLVILDEADAMTKDAQNALRRVIEKY
TDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQSLIVPRLDFIVKSEGLQMTPDGREAL
LRVSKGDMRTVINTLQSTAMSFEVVSESTVYQCIGQPTPAEMKKVVTLLLNQTAKTCMNK
IKKSLFENGYALQDVITHLHDLAFSMDIPDSAMSAIIVGLGEVEENLSTGCSNETQLAAV
VAAFFEAKSCV
NT seq 1656 nt   +upstreamnt  +downstreamnt
atgtcaatcgaaaaaaaggttttcgatgttcaacacttttgtaagcgtcatttgcaaatc
aaaaacgatcaaatctacacaaaattcgagcttttctcactcatcgatttgatcatcgat
gagtttcgaaaagagccgacgctggcagaaatctccccgccggttaggatcgtcggagac
attcatgggcaacacgacgatcttgtacgccttttgaattgtaaaaatgaaggaaatact
gcttcgattgatgacagaaagccaagctatgcgttttctaccaagaaaatcccaaatttt
caaaatttcgtcttccagatcctgtttcccaagcaatacgtccttctacgtggcaatcat
gagacaaaagtgataaatttcagatatgggtttaggcacgaaatcctccgccgtctgacg
tcgaaaagagacgctcaggaggtttgggaacgattcaacgacgcgttttcgtttatgcca
ttagcctgtttggttggacacaaaattctttgtatgcacggaggaattagtccggattta
gtgtctctggatgctattcgaatgattcaacgcccgttaatcgatgttaaccataatcgt
ctagctcaagacttgttgtgggcggatccagaggattttgagagaatgcttcccagtaca
acagtcgtctcgaatttgccatgggtggagaaatatcggccgagcaagctgaatgaactt
gtcgcacacgaacaagtggtgaaaaccttgacgaaatttatcgagaatcgcactctaccg
catctgctgttctacggaccgcctggaaccggaaagacgacgacggtgttggcggcggcg
cgtaaaatgtaccatccatcgaaaatgtcgtcgatggtgctggaattgaacgcttccgat
gagcgtggtatcgatgtagtcagaaacacaattgtcaacttcgctcaaaccaaaggactt
caagcgtttgcgagtgcctcggacaaggatagcgtcccgtttaagcttgtgatccttgat
gaggctgatgcgatgaccaaggatgcgcagaatgcgttgagaagagtaatcgaaaagtac
accgacaacgtgcgcttctgcatcatatgcaactatctggcctccattatccctgccatt
caatcccgttgcacccgtttccgtttcgcccctctcgaccaatcactcatcgtcccccgt
ctcgatttcatcgtcaaatctgaaggattacagatgacaccagacggtcgagaagcgctg
ttgagagtttccaaaggagacatgcgtactgtaatcaacacccttcaatccactgcaatg
tcatttgaggtggtctccgagtctacagtataccagtgtattgggcagccgacgccggcg
gaaatgaagaaggttgtgactttactgctgaatcaaaccgccaaaacctgtatgaataag
atcaagaagagcctctttgagaatggatacgccctgcaggatgtgataactcatttacac
gatttggcattctctatggatattccggattccgcgatgtctgcaataatcgttggatta
ggagaagtcgaggagaatctgtcgactggatgctcaaatgagacacaattggctgcggtt
gtcgccgcgtttttcgaggccaaatcatgtgtgtga

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