Caenorhabditis briggsae (nematode): CBG_23272
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Entry
CBG_23272 CDS
T01054
Symbol
Cbr-syx-5
Name
(RefSeq) Protein CBR-SYX-5
KO
K08490
syntaxin 5
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
CBG_23272 (Cbr-syx-5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cbr04131
]
CBG_23272 (Cbr-syx-5)
Membrane trafficking [BR:
cbr04131
]
SNARE
Syntaxin (Qa)
Stx-cisGolgi
CBG_23272 (Cbr-syx-5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNARE
Syntaxin-5_N
DUF16
MCPsignal
SAM_Ribosomal_mS41
ArlX
CEP19
Motif
Other DBs
NCBI-GeneID:
8578573
NCBI-ProteinID:
XP_045097799
WormBase:
CBG23272
LinkDB
All DBs
Position
V:9335010..9336713
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AA seq
378 aa
AA seq
DB search
MSDFHNIRSRRRIPEPNSYSTVDFDYDPDQKNHKPAGPGGIAYSSFSTVFNASASQLWNS
AQEALASSYDTAEGQEAVDADRLKVAETLESLTIFGSPLDHIIITMPSRDRTSEFRATAK
SYEMKAAANGVRPHPKHEMLAESVQFNQLAKRIGRELSQTCAKMEKLAEFAKKRSLYEER
SQIDHLSSIVKTDITGLNKQIAALQDFQEDVLEITETMKAEKNRRDKFSNNTPLPMGLPS
SSSGANVRSKLLQDDEQHGSSSIALDMGALDNFQSQKTMQQRDTSLEYAQARSNTMATIE
GSISELGQIFSQLASLVSEQGEMITRIDSNVEDTALNIDMAHSELVRYLQNISKNRWLMI
QVFGVLMVFFVVFVLFLT
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactttcacaacattagatctcgtagacgcataccagaacccaattcttactcg
acagttgatttcgattacgatccggaccagaaaaatcacaagccagctggccctggtgga
atcgcctacagctccttctctaccgttttcaacgcgtctgcttctcaactttggaattct
gcgcaggaggcgcttgcatcttcttacgacacagcggaaggccaagaagctgtcgacgca
gatcgattgaaagttgcagagacactcgaatccttgactatttttggaagtccattggat
cacattattatcaccatgccgtctcgagacagaacttctgaattccgggccactgccaaa
tcttatgagatgaaagcagcagccaatggtgttcgaccacacccaaagcatgagatgctt
gcggaatcagttcaattcaatcaactcgccaaacgaattggacgtgaattgagtcaaaca
tgtgcaaaaatggaaaaactggcagaattcgcgaaaaagcgaagtttgtatgaagaacga
tctcaaatcgaccatctttcatctatcgtcaaaaccgatatcactggtctcaacaaacaa
atcgcagcccttcaggattttcaagaagacgtgctggaaattacggagaccatgaaagct
gagaagaatcgtcgtgataagttttcgaacaacactccgcttccaatgggactcccatca
tcttcatctggtgcgaatgttcgttctaaactccttcaagacgacgagcagcacggttct
tcgagcatcgccttggatatgggagcgttagataatttccaatctcaaaaaaccatgcaa
cagcgagacacatccttggaatatgcccaagcccgtagcaatacgatggctacaattgaa
ggttcgatttccgaacttggccaaatcttctcccagctggcttcactagttagcgaacaa
ggagaaatgatcactagaattgattcgaacgtcgaagacacagccctgaacatcgacatg
gcccattcagagctcgttagatacctccagaacattagcaaaaatcgttggcttatgatt
caagtcttcggtgttctgatggtgtttttcgtcgtattcgtgctcttcttgacctaa
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