KEGG   Caenorhabditis briggsae (nematode): CBG_24189
Entry
CBG_24189         CDS       T01054                                 
Symbol
Cbr-rnp-5
Name
(RefSeq) Protein CBR-RNP-5
  KO
K14325  RNA-binding protein with serine-rich domain 1
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03013  Nucleocytoplasmic transport
cbr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CBG_24189 (Cbr-rnp-5)
   03015 mRNA surveillance pathway
    CBG_24189 (Cbr-rnp-5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_24189 (Cbr-rnp-5)
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CBG_24189 (Cbr-rnp-5)
SSDB
Motif
Pfam: RRM_1 RRM_5
Other DBs
NCBI-GeneID: 8582746
NCBI-ProteinID: XP_045091268
WormBase: CBG24189
LinkDB
Position
III
AA seq 293 aa
MVEKEAAKKRGRSSSSSSSSSSGSSSSGSSGSGSRSSSSSSSSRSRSRSPRRRENRPIRG
GRSRSPIRRGSPPRGARADRGGGRPSPSPPRRRHITPSPPRRGGRDRSGSRQRRRSPPAR
RSSPMPARSSSPIKRIIIKNLSKNVIREHVEEIFSIYGAIAKVDLPPDRNHTHIHRGYGY
VDYQNVEDAEKSIKYMDGGQVDGQIIQVEMTIGRQQTVRRQMSPIRRRASPPPRDRDRDR
KSPIRRGGGNRSPPRRRSPMGGRGSGANNMPLGPSRFRRGSRSRSPINRRSRS
NT seq 882 nt   +upstreamnt  +downstreamnt
atggttgaaaaagaagccgcaaaaaagcgaggtcgctcttcgtctagcagctcgtccagt
agctccggatcatcttcttctggttcatccggttcgggatcgcgatcatccagttcctct
tcttcatctcgctctcgctcccgttctccacgacgtcgtgaaaatcgcccaattcgcgga
ggtcggtctcgttctccaattcgtcgtggctccccaccacgaggagctcgtgcggatcga
ggaggtggccgcccatctccctctccgccacgtcgtcgacatataaccccatcaccacca
cgtcgtggaggacgtgatagaagtggaagtcgtcagagaaggcgctctccaccggcaaga
cgaagcagtccgatgccggcacgctcttctagtcctataaagagaataatcattaaaaat
ctgagcaagaatgtgatccgtgagcacgtcgaagagatattctctatttatggagctatc
gcaaaggtcgacttgccaccagaccgcaatcacacccacattcatcgtggatacggatac
gttgactatcagaatgtagaggatgctgaaaagtcgataaagtatatggatggtggacaa
gtcgatggacaaatcatccaggttgaaatgactatcggacgtcagcaaacagttcgccgt
cagatgtcaccaatcagaagacgtgcttcaccaccgccacgggatagagacagagataga
aagtcgcctatcagacgtggaggaggaaacagaagtccaccacgcagacgctcaccaatg
ggaggtcgtggatctggcgccaacaacatgccactggggcccagcagattccgccgagga
agccgatctcgttcaccaatcaacagaagatcccgctcataa

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