Caenorhabditis briggsae (nematode): CBG_24189
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Entry
CBG_24189 CDS
T01054
Symbol
Cbr-rnp-5
Name
(RefSeq) Protein CBR-RNP-5
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03013
Nucleocytoplasmic transport
cbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CBG_24189 (Cbr-rnp-5)
03015 mRNA surveillance pathway
CBG_24189 (Cbr-rnp-5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_24189 (Cbr-rnp-5)
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CBG_24189 (Cbr-rnp-5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
8582746
NCBI-ProteinID:
XP_045091268
WormBase:
CBG24189
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All DBs
Position
III
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AA seq
293 aa
AA seq
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MVEKEAAKKRGRSSSSSSSSSSGSSSSGSSGSGSRSSSSSSSSRSRSRSPRRRENRPIRG
GRSRSPIRRGSPPRGARADRGGGRPSPSPPRRRHITPSPPRRGGRDRSGSRQRRRSPPAR
RSSPMPARSSSPIKRIIIKNLSKNVIREHVEEIFSIYGAIAKVDLPPDRNHTHIHRGYGY
VDYQNVEDAEKSIKYMDGGQVDGQIIQVEMTIGRQQTVRRQMSPIRRRASPPPRDRDRDR
KSPIRRGGGNRSPPRRRSPMGGRGSGANNMPLGPSRFRRGSRSRSPINRRSRS
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaaaagaagccgcaaaaaagcgaggtcgctcttcgtctagcagctcgtccagt
agctccggatcatcttcttctggttcatccggttcgggatcgcgatcatccagttcctct
tcttcatctcgctctcgctcccgttctccacgacgtcgtgaaaatcgcccaattcgcgga
ggtcggtctcgttctccaattcgtcgtggctccccaccacgaggagctcgtgcggatcga
ggaggtggccgcccatctccctctccgccacgtcgtcgacatataaccccatcaccacca
cgtcgtggaggacgtgatagaagtggaagtcgtcagagaaggcgctctccaccggcaaga
cgaagcagtccgatgccggcacgctcttctagtcctataaagagaataatcattaaaaat
ctgagcaagaatgtgatccgtgagcacgtcgaagagatattctctatttatggagctatc
gcaaaggtcgacttgccaccagaccgcaatcacacccacattcatcgtggatacggatac
gttgactatcagaatgtagaggatgctgaaaagtcgataaagtatatggatggtggacaa
gtcgatggacaaatcatccaggttgaaatgactatcggacgtcagcaaacagttcgccgt
cagatgtcaccaatcagaagacgtgcttcaccaccgccacgggatagagacagagataga
aagtcgcctatcagacgtggaggaggaaacagaagtccaccacgcagacgctcaccaatg
ggaggtcgtggatctggcgccaacaacatgccactggggcccagcagattccgccgagga
agccgatctcgttcaccaatcaacagaagatcccgctcataa
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