Caenorhabditis briggsae (nematode): CBG_24679
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Entry
CBG_24679 CDS
T01054
Name
(RefSeq) Protein CBG24679
KO
K13174
THO complex subunit 5
Organism
cbr
Caenorhabditis briggsae (nematode)
Pathway
cbr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CBG_24679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbr03019
]
CBG_24679
03041 Spliceosome [BR:
cbr03041
]
CBG_24679
Messenger RNA biogenesis [BR:
cbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
CBG_24679
Spliceosome [BR:
cbr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CBG_24679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
DUF503
Motif
Other DBs
NCBI-GeneID:
8590419
NCBI-ProteinID:
XP_002648416
WormBase:
CBG24679
UniProt:
A0AAE9JAR8
A8WL86
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All DBs
Position
III:4755244..4757305
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AA seq
594 aa
AA seq
DB search
MSVNVRLVKRTTDEPKKKEPEVKMTEKSVQLLEGISKMDAPEKLFALEDKISMELTHDKL
FDEFNEDYTFLKTALEDYMDGKPTTIAAIARIARLRRNTRLCHYATAQMRKEVAERMDLV
DAKLLQLQNVTSEVQHIQKEIDRCLDFSAGDEELELIPVEEFYAEAPETISKAEETMGNE
HEQYLARLKYEDNQRRDLLSTLNELEGRRNVLQSDIRGKEVRIQGLKPKLDDLAKMVEPV
FDTVGAKFKDLTIDAEQRKMSLSLPAPLAVAHIHATAYKEIHDDKMFEFSITGNNETTKP
TKEDGETKRRRKEDETIQEKINEMASKILDVHPMSLNLDIECSNDLKITMSIQYLTELKL
TTAKWSIHQDSKAKKSILFNADSLMSDLFEDDSGDKCPSKVGDLKSEHLKLNFNSNAKTI
GKPYKFIQELSGTGEAEGVSVTEHLRKIIKSIRQRVSDRCVLDGIIRNLEAKNTEELDCG
EDVKISSFKNCEDEAFIALIPASLSEEIAKSSASDRFSYKIEIVDSENKHLTAFLSIPCD
YPRNPVLFAISAPDANPETVKEIEDRLNNESFYVDNANSLKEQLNILLKHVNLS
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgaacgttcgcctggtaaaacgaacaaccgatgaaccgaagaagaaagagcca
gaagtgaaaatgacggagaaatcggtccaactcttagagggaatatcaaaaatggatgca
cccgagaaactttttgctcttgaagacaaaatctcgatggaactcacacatgataagtta
ttcgatgagttcaatgaagactacacattcctaaagacggcattagaggactatatggat
ggaaaaccaacaaccattgcggcaatcgccaggattgctcggttgcgtcgaaacacccga
ctatgccattacgcgaccgctcaaatgagaaaagaagttgcagaacgaatggatctcgtc
gacgcgaagcttttacaacttcaaaatgtcactagcgaagttcaacacattcaaaaagag
atagatcgttgtctagacttcagcgccggtgacgaggaacttgagctgattccagttgaa
gaattctacgcagaggcccctgaaactatttccaaagctgaagaaacgatgggcaatgag
catgagcagtatttagcaagattgaagtatgaggataatcaaagaagagatttattgtct
actctcaatgaattagaagggcgtcgtaacgttctgcaaagtgatattcgaggaaaagaa
gttcgtattcaaggactgaaaccaaaacttgacgatcttgccaaaatggtcgaaccagtg
ttcgacacagttggggcaaagttcaaagaccttaccatagacgcggagcagcggaagatg
tcgttaagtcttccagctccacttgcagttgctcatatccatgcgacagcttacaaagag
attcacgatgataagatgtttgaattcagtatcactggtaacaatgagacaacgaagcca
acgaaagaagatggagaaacgaaaagaagacgaaaagaggacgaaacaatacaagagaaa
atcaatgaaatggcttcgaagattctggatgtgcatccgatgagtctcaacctggatatt
gagtgttccaatgatttgaagatcacgatgtcgattcaatacctgactgaattgaagctt
acaacagctaaatggagcattcatcaagattccaaggcaaagaagtcgatcttattcaac
gctgattctttgatgtctgatttattcgaagacgattccggagataaatgtcccagtaaa
gttggtgacttgaaaagcgagcatctcaaactaaatttcaactcaaatgcgaaaacgatt
ggaaaaccatacaagtttattcaggagttgagtggcactggagaagcggaaggagtctct
gtaacggagcatctccggaagattatcaaatcgatcagacagagggtctctgatcgctgt
gtgttagatggaattattcgtaatttggaagcaaagaacacagaagaattggattgtgga
gaagatgtcaaaatcagttcatttaaaaattgtgaggacgaggcttttattgctttgata
ccggcgtctctgtcagaagaaatcgcgaaatcttctgcatcagatcgtttctcatacaaa
attgaaattgtggatagtgaaaacaaacacctcaccgcattcttatcaatcccttgcgac
tatccgaggaatcctgttttgtttgcgatcagtgctccagacgctaatccagaaaccgta
aaggaaatcgaggatcgtctaaacaacgaatcattctatgtggacaatgctaacagtctc
aaagaacaattgaatattcttttgaagcatgtcaatctttcctaa
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