KEGG   Caenorhabditis briggsae (nematode): CBG_24679
Entry
CBG_24679         CDS       T01054                                 
Name
(RefSeq) Protein CBG24679
  KO
K13174  THO complex subunit 5
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CBG_24679
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbr03019]
    CBG_24679
   03041 Spliceosome [BR:cbr03041]
    CBG_24679
Messenger RNA biogenesis [BR:cbr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     CBG_24679
Spliceosome [BR:cbr03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CBG_24679
SSDB
Motif
Pfam: FmiP_Thoc5 DUF503
Other DBs
NCBI-GeneID: 8590419
NCBI-ProteinID: XP_002648416
WormBase: CBG24679
UniProt: A0AAE9JAR8 A8WL86
LinkDB
Position
III:4755244..4757305
AA seq 594 aa
MSVNVRLVKRTTDEPKKKEPEVKMTEKSVQLLEGISKMDAPEKLFALEDKISMELTHDKL
FDEFNEDYTFLKTALEDYMDGKPTTIAAIARIARLRRNTRLCHYATAQMRKEVAERMDLV
DAKLLQLQNVTSEVQHIQKEIDRCLDFSAGDEELELIPVEEFYAEAPETISKAEETMGNE
HEQYLARLKYEDNQRRDLLSTLNELEGRRNVLQSDIRGKEVRIQGLKPKLDDLAKMVEPV
FDTVGAKFKDLTIDAEQRKMSLSLPAPLAVAHIHATAYKEIHDDKMFEFSITGNNETTKP
TKEDGETKRRRKEDETIQEKINEMASKILDVHPMSLNLDIECSNDLKITMSIQYLTELKL
TTAKWSIHQDSKAKKSILFNADSLMSDLFEDDSGDKCPSKVGDLKSEHLKLNFNSNAKTI
GKPYKFIQELSGTGEAEGVSVTEHLRKIIKSIRQRVSDRCVLDGIIRNLEAKNTEELDCG
EDVKISSFKNCEDEAFIALIPASLSEEIAKSSASDRFSYKIEIVDSENKHLTAFLSIPCD
YPRNPVLFAISAPDANPETVKEIEDRLNNESFYVDNANSLKEQLNILLKHVNLS
NT seq 1785 nt   +upstreamnt  +downstreamnt
atgtcggtgaacgttcgcctggtaaaacgaacaaccgatgaaccgaagaagaaagagcca
gaagtgaaaatgacggagaaatcggtccaactcttagagggaatatcaaaaatggatgca
cccgagaaactttttgctcttgaagacaaaatctcgatggaactcacacatgataagtta
ttcgatgagttcaatgaagactacacattcctaaagacggcattagaggactatatggat
ggaaaaccaacaaccattgcggcaatcgccaggattgctcggttgcgtcgaaacacccga
ctatgccattacgcgaccgctcaaatgagaaaagaagttgcagaacgaatggatctcgtc
gacgcgaagcttttacaacttcaaaatgtcactagcgaagttcaacacattcaaaaagag
atagatcgttgtctagacttcagcgccggtgacgaggaacttgagctgattccagttgaa
gaattctacgcagaggcccctgaaactatttccaaagctgaagaaacgatgggcaatgag
catgagcagtatttagcaagattgaagtatgaggataatcaaagaagagatttattgtct
actctcaatgaattagaagggcgtcgtaacgttctgcaaagtgatattcgaggaaaagaa
gttcgtattcaaggactgaaaccaaaacttgacgatcttgccaaaatggtcgaaccagtg
ttcgacacagttggggcaaagttcaaagaccttaccatagacgcggagcagcggaagatg
tcgttaagtcttccagctccacttgcagttgctcatatccatgcgacagcttacaaagag
attcacgatgataagatgtttgaattcagtatcactggtaacaatgagacaacgaagcca
acgaaagaagatggagaaacgaaaagaagacgaaaagaggacgaaacaatacaagagaaa
atcaatgaaatggcttcgaagattctggatgtgcatccgatgagtctcaacctggatatt
gagtgttccaatgatttgaagatcacgatgtcgattcaatacctgactgaattgaagctt
acaacagctaaatggagcattcatcaagattccaaggcaaagaagtcgatcttattcaac
gctgattctttgatgtctgatttattcgaagacgattccggagataaatgtcccagtaaa
gttggtgacttgaaaagcgagcatctcaaactaaatttcaactcaaatgcgaaaacgatt
ggaaaaccatacaagtttattcaggagttgagtggcactggagaagcggaaggagtctct
gtaacggagcatctccggaagattatcaaatcgatcagacagagggtctctgatcgctgt
gtgttagatggaattattcgtaatttggaagcaaagaacacagaagaattggattgtgga
gaagatgtcaaaatcagttcatttaaaaattgtgaggacgaggcttttattgctttgata
ccggcgtctctgtcagaagaaatcgcgaaatcttctgcatcagatcgtttctcatacaaa
attgaaattgtggatagtgaaaacaaacacctcaccgcattcttatcaatcccttgcgac
tatccgaggaatcctgttttgtttgcgatcagtgctccagacgctaatccagaaaccgta
aaggaaatcgaggatcgtctaaacaacgaatcattctatgtggacaatgctaacagtctc
aaagaacaattgaatattcttttgaagcatgtcaatctttcctaa

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