Caenorhabditis briggsae (nematode): CBG_27079
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Entry
CBG_27079 CDS
T01054
Name
(RefSeq) Protein CBG27079
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
cbr
Caenorhabditis briggsae (nematode)
Brite
KEGG Orthology (KO) [BR:
cbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cbr03016
]
CBG_27079
Enzymes [BR:
cbr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
CBG_27079
Transfer RNA biogenesis [BR:
cbr03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CBG_27079
Prokaryotic type
CBG_27079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
R3H_PUS7L
PUS7L_N
NPFF
Motif
Other DBs
NCBI-GeneID:
68918539
NCBI-ProteinID:
XP_045098898
WormBase:
CBG27079
UniProt:
B6IHF5
LinkDB
All DBs
Position
V:10709525..10711510
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AA seq
586 aa
AA seq
DB search
METEFGLTEYASGHEITPIPCLLKEMYTDFIVQEILDDGKVLSIPSPDVILESTGSKDVQ
IEESVEKPSCISDETLAAIEERFSTKGTPVLVKVDTLTKEERKSIHHFVRERFSGKLITE
TKDDGIYVSHGHTQSTRKRKNWDENIPKECHFTMCKENKETSYACQLIAKFLNIGPNNIK
THGIKDKRGVTAQRVSVTKVLESKILDLNSRLRGIKVFGCEYKNEPVKMGGHWGNRFSIV
LRDLPNDSEPTLHERLETFQNTGFLNYFGTQRFGSRCSTTAEIGLAIAKRDWEGAVRMIL
SNAMPDHLENGQVGWAVKCFTETGDARKAFSKLKGAQAFATVEGQILKCLTRGGTWQKCI
TEAIPIQSRSLYVHAYQSLLWNKVASRRVKEYGTRVHESDVGADGKPLGEHSTHYDIHIA
LPGENSAFENSYGAKWISELLKEDGLTPASFTSLRDKFSLGESSRPLFVEAKELKWKFIH
YEQPRAFLQDGLQTRAIPESEQKGPLLALQIQFSLSSGSYATVALREVTGYDMGKKSMRD
ASLKSQKGAEQNEEQEDKDDNELTEANPEVVEVVEVTEVAAVEEAN
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccgaatttggtctaaccgaatatgccagtggacatgaaatcactccgatccca
tgtttactcaaggaaatgtacacggacttcatcgtccaagaaattttagatgatggcaag
gtcctatcaatcccatctcctgatgtcatactggaaagcaccggatcgaaggatgtgcaa
attgaagagagtgttgaaaaaccaagctgcatctctgatgaaactctcgcggctattgaa
gaacggttttctacaaaaggaacgccggttctagtgaaagtcgacactctgaccaaagag
gaacgaaagagtattcaccatttcgtgagagaacgattctcagggaaattgattacggaa
acaaaagacgacggtatctatgtgtctcatggacatacccaaagcactaggaaacgtaag
aattgggatgagaacatcccaaaagagtgccatttcactatgtgcaaagagaacaaggaa
acaagttatgcgtgtcagctgatcgcgaagtttttgaatattggaccaaacaacatcaag
actcacggaatcaaagataaaagaggagttactgctcagagagtcagcgttactaaagtt
ctcgaaagcaagattctcgatttgaactcaagactacgtggaatcaaagtatttggatgc
gaatacaaaaatgagccagtgaagatgggaggtcattggggaaaccgttttagtatcgta
ctgagagacctaccaaatgattctgagcctacgttgcatgagaggttggaaacattccaa
aatactggatttttgaactattttggaactcagcgatttggctcacgatgctctaccaca
gctgaaatcggattggcaatcgctaagagagactgggaaggagctgtgaggatgatcttg
tcaaatgccatgccagatcatttggaaaacggtcaagttggatgggctgtcaaatgcttc
acggaaactggcgatgctagaaaggcattctccaaactcaaaggagctcaagcgtttgcg
accgttgaaggacagatcctgaagtgtctgacacgtggcggcacatggcaaaaatgcatc
accgaagctattcccattcagagtcgcagtctctacgttcatgcgtatcaaagccttctt
tggaacaaagttgcttctcgacgagtgaaggagtatggaactcgtgttcatgaaagtgat
gtcggagcagatggaaaaccacttggcgaacattccactcactatgacatccacatcgcc
ctaccgggagaaaattcagcatttgagaatagctacggcgctaagtggatcagcgaacta
ctcaaggaagacggattaactccagctagttttacgtccttgcgagataaattctctctc
ggggagtcatctcgtccattgtttgtcgaagctaaggagctcaaatggaagtttatccac
tatgagcaaccaagagcctttctccaagatggtctacagacgcgtgctattccagaatcg
gaacaaaaaggacccctactagctttgcaaattcaattcagcttgagctctggatcatac
gctacagttgctctccgtgaagtgactggatacgacatgggcaagaaatctatgcgcgac
gcttcacttaaatcgcaaaaaggtgcggagcaaaacgaagagcaagaagataaggatgat
aatgaactgacggaggccaaccccgaagtagtggaagtagtggaagttacagaagttgct
gccgtcgaagaagcaaactaa
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