Citrobacter braakii: A6J81_04855
Help
Entry
A6J81_04855 CDS
T04825
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cbra
Citrobacter braakii
Brite
KEGG Orthology (KO) [BR:
cbra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbra03019
]
A6J81_04855
Enzymes [BR:
cbra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A6J81_04855
Messenger RNA biogenesis [BR:
cbra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A6J81_04855
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
ResIII
PhoH
DUF6145
AAA_16
SLFN-g3_helicase
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ARC40107
LinkDB
All DBs
Position
complement(971568..975470)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFNMLQQQLDSLMLRDRQRFARRLHGVKKVKNPDAQQAIYQEMAKEIDHAAGK
VVLREAARPVISYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSKH
FNNAPIIEVSGRTYPVEVRYRPIVEDADDTERDQLQAIFDAVEELGRESQGDILIFMSGE
REIRDTADALNKLDLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCKLDFLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDTDKQEFTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALSRELFIRHALVEGDWQTRHAFFRDNLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVVSARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQIDESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLQEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDQLIDANGGPVWTEEGFTALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLADIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAIDPHRDRAQMLKVDSVQQAWKQWLNKLPPARREDDD
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQITG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattaaccttcaacatgttgcagcaacagctggattcactgatg
ctgcgtgacagacagcgttttgcccgtcgcctgcacggtgttaagaaggttaaaaatcct
gatgcacaacaggccatttaccaggagatggcaaaagagattgatcacgcagccggtaaa
gttgtgctgcgtgaagcggcgcgtccggtcatcagctatccggaaaacctgccagtcagc
cagaaaaaacaggatattctggaggcaattcgcgaccatcaggtggtgattgttgccggt
gagaccgggtcaggtaaaaccacccagttacccaaaatctgtatggagctcggacgcggg
ataaaagggctgatcggccatacccaaccgcgtcgtctggcggcgcgtacggtagcgaac
cgtattgcggaagaactgcaaaccgagccgggtggctgtatcggctataaggtccgtttt
agcgatcatgtcagcgacaacacgatggtgaagctgatgacggacggtatcttgctggcg
gaaatccagcaggatcggctgttgatgcagtacgacactatcatcatcgatgaagcgcat
gaacgcagcctgaatatcgactttctgctcggctatctgaaagagcttctgccgcgccgt
ccggatctaaaaattatcatcacttcggcgactatcgacccggagcgtttttcaaagcat
ttcaataatgcgccgattatcgaagtctccggtcgaacgtatccggtggaagttcgctat
cgtccgattgttgaagatgcagatgataccgaacgtgaccaactgcaggctatttttgat
gctgtagaggaattaggccgtgaaagtcagggcgacattctgatctttatgagcggcgag
cgcgaaatccgcgacaccgccgatgccctgaataagctggatttacgccacaccgaagtg
ctgccgctgtatgcgcgtctctccaatagcgagcagaaccgcgtgttccagtcgcacagc
ggtcgccgtatcgtgctggcgaccaacgtggcggaaacgtcgctgaccgtaccgggcatc
aagtatgtgattgacccgggcactgcgcgtattagtcgttacagttaccgcaccaaagtc
cagcgcttaccgatagaaccggtgtcacaggcttccgctaaccagcgtaaaggccgctgc
ggtcgtgtttcggaagggatctgtattcgtctgtattccgaagatgatttcctgtctcgc
cctgagtttaccgatccggagatcctacgtactaacctggcgtccgttattttgcagatg
acggcgttggggttgggcgatatcgcggcgtttccgtttgttgaggcaccggataaacgc
aatattcaggacggcgtacgcctgctcgaagagctgggggcgataaccaccgacgaacag
gcaaccgcttataagttaacgccgttgggccgtcagctgtcgcaactgccggtggatccg
cgtctggcgcgcatggtgctggaagcgcaaaaacatggctgtgtgcgtgaggcgatgatc
attacatcggcgctgtctattcaggatccgcgcgagcgtccgatggacaagcagcaggct
tccgacgagaagcatcgccgtttccatgacaaagagtctgatttcctcgcatttgtgaac
ctgtggaactatctcggcgagcagcaaaaagcgctgtcgtcaaaccagttccgtcgccag
tgcaaacttgattttctgaactacctgcgcgtgcgtgaatggcaggatatttacacccag
ctgcgtcaggtagtgaaagagttagggatcccggttaacagcgaaccagctgaataccgg
gaaatccacgtcgcgctgctgaccggtttactgtcgcatatcgggatgaaagataccgat
aaacaggagtttaccggtgcgcgtaacgcccgcttctcgatctttccgggctccggtcta
tttaaaaaaccgccgaagtggacgatggtagcggagctggtggaaaccagtcgcctgtgg
ggacgtattgccgcacgcatcgatcctgagtgggttgaaccggttgcccagcatctgatc
aaacgttcatacagtgaacctcactgggaacgtgcgcagggcgcggtgatggcaacagaa
aaggtcaccgtctatggtttaccgattgtggcggcccgtaaggtgaactacagccagatc
gatcccgcactgtcgcgtgagttgttcatccgccatgcgctggtggaaggtgactggcaa
acgcgccatgcgtttttccgcgataacctgaagctacgggcggaggtggaagagttagag
cacaaatcgcgccgtcgcgacattctggtcgatgatgagacgctatttgagttttacgac
cagcgcatcagtcatgatgtggtctccgctcgtcactttgacagctggtggaaaaaggtc
agccgtgaaacgccggatctgctcaactttgaaaagagcatgcttatcaaagagggcgcg
gaaaaaatcagtaagctggattacccgaacttctggcatcagggtaacctcaaacttcgc
ctgagctatcagttcgaaccgggagctgatgcggacggtgtgactgtgcatattccgctg
ccgctgctcaatcagatcgacgaaagcggttttgaatggcaaattccggggctacgccgc
gaactggtgatcgccctgattaagtcgctgccgaaaccggtacgacgcaactttgtgcct
gcgccgaactatgccgaagcgtttttaggtcgcgtcacgccgctggaactgccgctgctg
gacgcgctggagcgtgaactgcgccgcatgaccggcgttaccgttgaccgtgaagactgg
cactgggatcaggtgcccgatcacctgaaaatcaccttccgggtcgtggatgataaaaat
aagaagctgcaggaagggcgttcgctgcaagatttgaaggatgcgctgaagggtaaagtt
caggaaacattgtctgcggtggcggatgacggtatcgaacaaagcgggttgcacatttgg
agcttcggtcagcttccggaaagttacgaacaaaaacgcggtaactataaggtcaaagcg
tggccagcgctggtggatgagcgtgacagcgtcgccatcaaactgtttgataacccactg
gagcaacagcaggcgatgtggtgtggtttacgccgcctgttgttgctgaatattccatca
ccgatcaaatatttgcatgaaaaactgcccaacaaagccaagctgggattgtactttaac
ccgtacggtaaagtgctggatttgattgacgactgtatctcctgcggtgtggatcagtta
attgacgccaacggcggtccggtgtggaccgaagaaggcttcaccgcgctgcatgagaaa
gtgagggctgaactgaacgatacggtggtggatattgctaagcaggtcgagcagatcctg
accgcggtatttaatatcaacaaacgtctgaaagggcgcgtggatatgaccatggcgctg
gggcttgcggatatcaaagcgcagatgggcgggctggtgtaccgtggatttgttaccggc
aatggtttcaaacgtctcggcgatacgttgcgctatttgcaggctatcgaaaaacgcctg
gagaaactggctatcgacccacatcgtgaccgtgcgcaaatgctgaaagtagatagcgtg
cagcaggcctggaagcagtggctcaataaactgcctcccgcgcggcgtgaagatgacgat
gtcaaagagatccgctggatgatagaagagctacgcgtcagctattttgcccagcagctt
ggtacgccgtatcccatctccgataaacgtattttgcaggcgatggagcagattacaggg
taa
DBGET
integrated database retrieval system
