Citrobacter braakii: A6J81_06870
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Entry
A6J81_06870 CDS
T04825
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbra
Citrobacter braakii
Pathway
cbra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A6J81_06870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbra03400
]
A6J81_06870
Enzymes [BR:
cbra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A6J81_06870
DNA repair and recombination proteins [BR:
cbra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A6J81_06870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ARC40457
LinkDB
All DBs
Position
1362117..1365563
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQHRYTLPAKAGDQRQLGELTGAACATLVAEIAEHHAGPVVLIAPDMQNALRLHDEIR
QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPAMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALREQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY
RLDFFDDEIDSLRLFDTDTQRTLEEVDAINLLPAHEFPTDKTAIELFRSQWRDTFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSETLPPLFSYFPANTLLVNTGDIETSAERFQADTL
SRFENRGVDPMRPLLPPESLWLRVDELFSELKRWPRVQLKTESLANKAANTNLGFQKLPD
IAVQAQQKAPLDALRKFLEGFTGPVIFSVESEGRREALGELLARIKVAPKRILRLDEAVD
NGRYLMIGAAEHGFIDSKRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQADVKL
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLFNDVENIQKTADRLAELVPEARIGI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMESIGFSLYMELLENAVDALKEGREPSLEDLTSQQTEVELRMPSLLPDDYIPDV
NTRLSFYKRIASAKGENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGTIEFAEKNHVNPVWLIGLLQKQPQHFRLDGPTRLKFMQDLSERKTRIDWVRQFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaacatcgttacacgctcccagcgaaagcaggcgatcagcgccagttgggt
gagcttaccggcgcggcctgcgcaacgctggttgccgaaatcgccgaacatcacgccggt
ccagtggtactgatcgcgccagacatgcaaaatgctttacgtctgcatgatgaaattcgt
cagtttaccgaccagatggtaatgaacctggccgactgggaaacgcttccctacgacagc
ttttctcctcatcaggagataatctcctcgcgtctctccacgctgtatcagctgcctgcc
atgcagcgcggcgtgctgatcgttccggtaaataccctgatgcagcgtgtttgtccgcac
agctatctgcacggccatgcgctggtcatgaaaaaaggtcagaggctttcgcgcgacgcc
ctgcgcgaacagctggacagcgctggctatcgccatgttgatcaggtcatggaacacggc
gaatacgccacgcgtggcgcgttgttggatctgttcccgatgggtagcgagttgccttat
cgtctggatttctttgatgacgaaatcgacagtctgcgtctgtttgataccgacacccag
cgcacgctggaagaagtcgatgccattaatttgctacccgcacacgaattcccgactgac
aaaacggccattgagctattccgtagccagtggcgggacacctttgaggtgaaacgcgac
gccgagcatatttaccagcaggtcagtaaaggcacgttacctgcgggtattgaatactgg
caaccgctgtttttcagcgagacgctgccgccgctgttcagctacttccccgccaatacg
ctattggtgaataccggtgatatcgagaccagcgcagaacgcttccaggccgatacgttg
tcacgttttgagaatcgcggcgttgatccaatgcgtccgcttctgccgccggaatccctg
tggctgcgggttgatgagctgttttctgaacttaaacgctggccgcgcgttcaactgaaa
accgagagtctggcgaacaaagctgcgaataccaacctcgggttccagaaactgccggac
atcgccgttcaggcgcagcaaaaagcaccactagatgcgttacgtaaatttcttgagggc
ttcaccggtccggtgattttctcagtggaaagtgaaggtcgccgtgaagcacttggcgag
ctgctcgcccgcattaaagtggcgccgaaacggatattacgactcgatgaggccgtagat
aacggtcgttatctgatgattggcgcagctgagcacggcttcatcgatagcaaacgcaat
ctggcgctgatttgtgaaagcgatctgctcggggaacgcgtggcgcgccgtcgccaggat
tctcgtcgcaccatcaatccggatacgttaattcgtaacctcgcagagctgcatcccggt
caaccggtggtgcatctggagcacggcgtgggtcgttatgccgggatgaccacgctggaa
gcgggcggtatcaccggtgaatatctgatgctcacctatgccaacgacgccaaactgtac
gtgccggtgtcgtcactgcatctgatcagccgctatgccggcggtgcagaagagaatgcg
ccgctgcataaacttggcggcgatgcctggtcccgcgcccgacagaaagccgctgagaag
gtacgcgatgtcgcagcagagctgctggatatttatgcccagcgcgcggcgaaagaaggc
ttcgcctttaagcatgaccgtgagcagtaccagctgttttgcgacagcttcccgtttgaa
accacgcctgaccaggcgcaggcgatcaacgcggtactcagcgatatgtgccaaccgctg
gccatggaccgcctggtatgtggtgacgtcggctttggtaaaaccgaggtcgcgatgcgc
gctgcctttcttgccgtagagaaccacaagcaggttgccgtgctggtgcctaccaccctg
ctcgcgcagcagcacttcgacaacttccgcgatcgctttgccaactggccggtacgcatc
gagatgttgtcccgtttccgtagcgccaaagagcaagcgcagattctggagcaggttgcc
gaaggtaaaatcgatattctcattggcacgcacaaactgctgcaagcggatgtgaagtta
aaagatctgggtctgctgattgtcgatgaagagcatcgtttcggcgttcgccacaaagaa
cgcatcaaggcgatgcgcgcagatgtcgatattctgaccctgacggcaacgccaattccg
cgtacgcttaatatggcaatgagcggcatgcgcgatctgtcgatcatcgccacaccgcct
gcccgtcgtctggcagtcaaaaccttcgtgcgcgaatatgacaacctggtcgtgcgcgag
gcaatcctgcgtgaagttctgcgcgggggacaagtttattatctgtttaacgatgtcgaa
aatatccagaaaactgctgacagactagcggaactggtgcctgaagcgcggattggtatc
ggccacggacaaatgcgcgagcgcgaactggaacgcgtgatgaacgatttccaccatcag
cgttttaacgtgctggtgtgtaccaccattatcgaaaccgggatcgacattcccaccgcc
aataccatcatcatcgaacgagccgatcacttcggtttggcgcaattacaccagttgcgt
ggtcgtgtgggacgttctcaccaccaggcttacgcctggctgctgacgccgcatccgaaa
gcgatgaccaccgacgcgcaaaaacgcctggaggccatcgcctcgctggaagatttgggc
gcaggttttgcgctggcgacccacgacctcgaaattcgcggcgccggggaattgctgggt
gaagatcagagtggttccatggaaagcatcggcttctcgctgtatatggagctgctggaa
aatgccgtcgatgcgctcaaagaggggcgtgagccttcgctggaagatctcaccagccag
caaaccgaagtcgaactacgcatgccgtcactactgccagatgactatatcccggatgtt
aacacccgactgtcgttctataagcgtattgccagtgccaaaggtgaaaacgagctggaa
gaaattaaggtcgagctgattgaccgtttcggcctgctgcccgacccggctcgtacgttg
ctggatatcgcccgtttacgccagcaggcgcagaaactggggatcagaaagctcgaaggt
aatgaaaaaggcggtactattgaatttgccgagaaaaaccacgttaacccggtctggctg
attgggctactgcaaaaacagccgcagcacttccgcctcgacggtccaacccggctgaaa
tttatgcaagatctgagcgagcgtaaaacccgaattgactgggtacgccagtttatgcgc
cagcttgaagaaaacgccgtagcatag
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