Citrobacter braakii: A6J81_20065
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Entry
A6J81_20065 CDS
T04825
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbra
Citrobacter braakii
Pathway
cbra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6J81_20065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbra03019
]
A6J81_20065
03009 Ribosome biogenesis [BR:
cbra03009
]
A6J81_20065
Enzymes [BR:
cbra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A6J81_20065
Messenger RNA biogenesis [BR:
cbra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A6J81_20065
Ribosome biogenesis [BR:
cbra03009
]
Prokaryotic type
rRNA helicases
A6J81_20065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ARC42821
LinkDB
All DBs
Position
4102458..4104437
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AA seq
659 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGG
RDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNADLLGKRRLEKFAAKVQQQLESSDLDQY
RALLAKMQPEEELDIETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDR
GPRDRNDRGGEDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNI
KLFASHSTIELPKGMPGDVLQHFTRTRILNKPMNMQLVGDAVPHTGGERRGGGRFSGERR
EGGRGEGRNFSGERREGGRGDGRRFSGERREGNRGPRRDDSSAPRRDDSAGRRRFGGDA
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcccttaacgat
ctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctgctgggcggc
cgcgatgttctgggtatggcccagacgggtagcggcaaaactgcagcgttctctttaccg
ctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctggcaccgacc
cgcgaactggcggttcaggttgcagaagccatgacggatttctctaaacacatgcgcggc
gtgaacgtggttgccctgtacggcggccagcgttatgacgtgcaattacgtgccctgcgt
cagggacctcagatcgtcgtcggtacgccgggtcgtctgctggatcacctgaagcgcggt
actctggacctctccaaactgagcggtctggtgctggacgaagctgacgaaatgctgcgt
atgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggaaggtcatcagacc
gctctgttctccgcgactatgccggaagcgattcgtcgtattacccgccgctttatgaaa
gagccgcaggaagtacgcatccagtccagcgttactacccgtcctgacatcagccagagc
tactggactgtatggggcatgcgtaaaaatgaagcgctggtgcgtttcctggaagcagaa
gattttgatgcggcgattatcttcgttcgtaccaaaaatgcgaccctggaagtggcagaa
gcgctggagcgtagcggttatagcagcgctgcactgaacggcgacatgaaccagtctctg
cgtgagcagactctggagcgtctgaaagatggccgtctggatattctgattgcaaccgac
gttgcggcccgtggcctggacgttgagcgtatcagcctggttgttaactacgacatcccg
atggattccgagtcttacgttcaccgtatcggccgtaccggtcgtgcgggtcgtgcgggt
cgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgtaacatcgaacgcacc
atgaagctgactattccggaagtagaactgccgaacgcagacctgctgggcaaacgccgt
ctggaaaaattcgctgctaaagtacagcagcagttggaaagcagcgatctggatcagtac
cgtgctctgctggcgaaaatgcagccggaagaagagctggatatcgaaaccctggcagca
gcactgctgaagatggctcagggcgaacgtccgctgatcctgccgccagatgcgccgatg
cgtccgaaacgcgaattccgcgaccgtgatgaccgtggcccgcgtgaccgcaacgatcgt
ggcccgcgtgaccgtaatgaccgtggtggtgaagaccgtccgcgtcgtgaacgtcgtgac
gttggcgatatgcagctgtaccgcattgaagtgggtcgtgatgacggtgttgaagttcgt
catatcgttggtgcgattgctaacgaaggcgatatcagcagccgttacatcggtaacatc
aagctgtttgcttcccactccaccatcgaactgccgaaaggtatgccgggcgacgtgctg
cagcactttacccgtactcgcatcctgaacaagccgatgaacatgcagctggttggcgat
gcagttccgcacaccggtggcgagcgtcgtggcggtggccgtttcagcggtgagcgtcgt
gaaggcggtcgcggtgaaggtcgtaactttagcggcgaacgtcgtgaaggcggtcgtggc
gatggtcgtcgtttcagcggcgaacgtcgtgaaggcaaccgtggcccgcgtcgtgacgat
tcttctgctccgcgtcgtgatgactctgctggtcgtcgtcgtttcggcggtgacgcataa
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