Corvus brachyrhynchos (American crow): 103611183
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Entry
103611183 CDS
T08418
Symbol
HTT
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
cbrc
Corvus brachyrhynchos (American crow)
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbrc03019
]
103611183 (HTT)
04131 Membrane trafficking [BR:
cbrc04131
]
103611183 (HTT)
03029 Mitochondrial biogenesis [BR:
cbrc03029
]
103611183 (HTT)
Messenger RNA biogenesis [BR:
cbrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103611183 (HTT)
Membrane trafficking [BR:
cbrc04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
103611183 (HTT)
Mitochondrial biogenesis [BR:
cbrc03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
103611183 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
103611183
NCBI-ProteinID:
XP_017583204
LinkDB
All DBs
Position
Unknown
AA seq
3022 aa
AA seq
DB search
MELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGASRSLRAALW
RFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPKIMAAFGNFANDNEI
KVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNVLLGLLVPVEDDHPT
LLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQLIQVYELTLHYTQHQ
DHNVVTGALELLQQLFRTPPPELLHALTACGGMAQVSVSKDEAASRSRSGSIVELIAGGG
SSCSPVLARKHKGKVLLGEEESLDDDSETRSDVSAASFAASVKGEITSELASSSGVSTAG
SAGSSAADATGHDIITEQPRSQHTLQSDSVDLASCDLTSTATEGEDDEVLSRSSSQISAV
QSDATMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGAEGQYSGMQIGQLQD
EEDEAANILQDDSSESFRNSSLALQQPHLLKTMSHSRQPSDSSVDRFISKEDAADAGDHE
NKPSRVKGDIGHYTDRDCAPLVHCVRLLSASFLLTGDKGALVPDRDVRVSVKALAVSCVG
AAVALHPESFFSKLYKTPLEAMGEEYEEQYVSDILNYIDHGDPQIRGATAILCGTIVNSI
LIKSRFDVEKWLINVRSSTGNLFSLIDCIPLLQKTLKDESSVTCKLACTAVRHCIMSLCS
SSYSELGLQLIVDLLTLKNSSYWLVRTELLETLAEVDFRLVSFLEGKTESLHRGIHHYTG
LLKLQERVLENVVISLLGDEDPRVRHVAAASLMRLVPKLFYNCDQGQADPVVAVARDQSS
VYLKLLMHETQPPSHFAVSTITRTYRGYNMLQSPTDITMENNLSRVIAAISHALTISTTR
ALTFGCCEALCLLSTTFPVCTWSVGWHCGVSQPSSSDEAQKGCTIGMAGLVLSLLSSAWF
PLDLSAHQDALILTGNLLAASAPKCLKNPWSAEEDSNQGAAKQEEPWPALADRALVTLVE
QLFSHLLKVINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKGKERESVEQASVPMS
PKKSGEASPASRQADAAGPVPTSKSSSVGSFYHLPSYLKLYDVLKATHANYKVTLDLQNT
NEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREPTMATVCVQQLLKTL
FGTNLASQYDGLSSNPSKAQGKAQRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMV
QAEQEHDASGWFDVLQKVSTQLKTSISSAAKHRADKNAIHNHIRLFEPLVIKALKQYTTT
TSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFF
FLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKAD
AGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMLA
KQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMASVSTVQLWISGILAI
LRVLISQSTEDIVLSRIQELSFSPYLISCQAINRLRCGENNVSTPEDRTEVKQVKYPPEE
TFSRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAA
ATRLFTGDGSDGSFYTLESLSDLVQSMIPTHPSLVLLWCQILLLVNYTNYNWWSEVHQTP
KRHSLSTTKLLSPHISGDSDESDLESKRGMCNREIVRRGALILFCDYVCQNLHDSEHLTW
LIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLAAPTTLKKTLQCLE
GIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATLQNSIAQLPVEELDR
IQEYLQNSGLAARHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDGEDQPALETVILDKD
WYVSLVRSQCYIKSDSALLEGAELVNRIPQPDLNSFMTSKEFNLSLLAPCLSLGMNELSR
DQKNSLFETARRVTLDHVSSAVQNLPASHQVFQPLLPTEPSAYWKKLSDIFGDEVMYQSM
MTLCRALAQYLLLLSKLPAGLRVPPDKEDDILKFVVMSVEALSWHLVHDQIPLSVDLQAG
LDCCCLTLQQPSLWNLLSSAAYVTYACSLINCIRFIIEAVAVEPGNQLLSPERKKNTSKP
LSEGEIDSNAQKTKHIIAACEMIAEMVECLQTVLSLGHKRNSSIPAFLTPVLKNIIISLA
RLPLVNSYTRVPPLVWKLGWSPKPLGDFGTVFPEIPVEFLQEKEIFKEFIYRINTLGWIS
RTQFEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAITSLVLSAMTIPVAG
NPAVSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRDNIATHHLYQAWDPV
PSLSPATTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGNNITPLREEEWGEDE
EDENDVPALSSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPSNPSKRTPVILISEV
VRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILVQYLIPATCKAAAVLGMDKAVA
EPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPIISEYLLSNLRGVAHC
VNIHNQQHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGSDESTPSIIYHCVLR
GLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCMYTGKEKISPSRITD
ANPGAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDDFFPPQDVMNKVIGE
FLSNQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFF
VSASTSQWISAILPHIISRMGKSEQVDVNIFCLVAIDFYRHQIDEELDRRAFQSVFEVVA
SPGTPYHRLLTCLQNVHKVTAC
NT seq
9069 nt
NT seq
+upstream
nt +downstream
nt
atggaactctttctcctctgcagtgaggatgcagaatctgatgtccggatggttgcagat
gaatgccttaataaagttattaaagctttgatggattccaatcttcccaggttacagtta
gagctgtataaagagattaaaaagaatggtgcttcaagaagtctacgtgctgcactctgg
agatttgctgagcttgcccatctagttcggcctcaaaagtgcaggccatacttggtgaac
cttttgccctgtctgacacggataagtaagagacccgaagaatcggtacaagagacgctg
gctgcggcaatacccaaaatcatggcagccttcggcaattttgcaaacgacaatgagatt
aaggttttgttgaaggctttcatagctaatcttaaatccagttcccccactatccgtcga
acagcagcaggatcagcagtaagcatctgtcaacattcacgaagaacacagtatttttat
gcctggttattgaatgtacttttaggcttgttggttcctgtagaagatgatcatcctact
cttttaattctgggtgttttacttacactaaggtatctcatacctttattgcaacaacaa
gtaaaagataccagcctgaaaggcagttttggtgtaacaaggaaagaaacagagatttca
ccttcaccagaacaacttatacaggtttatgaactgactctgcactacacccagcatcag
gaccataatgttgtgactggagctttagaattgctccagcagctctttagaacacctccc
cctgaactgctccatgccctgaccgcctgcgggggtatggctcaggtcagtgtatccaaa
gatgaagctgccagcaggagccgcagtgggagcatagtggaacttatagctggagggggg
tcttcatgcagccctgttcttgcaagaaagcataaaggtaaagtacttcttggtgaagaa
gagagcttggatgatgattctgaaacccgatctgatgtcagtgctgcatcatttgcagct
tctgtgaagggtgagataaccagtgaactggcttcttcatcaggtgtttcgacagctggg
tcagcggggagctcagccgctgatgccacaggacacgacatcatcacagagcagccccgt
tcccagcatacgctgcagtcagactctgtagacctggccagctgtgatttgacaagtaca
gctactgaaggggaagatgatgaagtacttagtcgaagctccagccagatcagtgctgtc
cagtcagatgccactatggatttgaatgatggcacacaggcttcctcaccaattagtgat
agctctcagactactacagaaggtccagactctgctgtaaccccttcggacagctctgaa
attgttttggagggtgctgaaggacagtattctggaatgcaaattgggcagctacaggat
gaggaagatgaagctgcaaatattctccaagatgattcatcagagtccttcagaaattct
tctcttgctcttcagcagcctcacctgctgaaaactatgagccatagtaggcagccctct
gatagcagtgtggatcgatttatatcgaaagaagatgcagcagatgctggtgatcacgag
aacaagccctccagggtaaagggggacatagggcactatactgacagagactgtgctcct
ttggtgcactgcgtcaggctgctgtcagcttccttcctgctcactggggacaaaggagct
ttagttcctgatagagatgtgagagtcagtgtaaaagccttggcagtaagttgtgttgga
gcagccgttgcacttcaccctgaatctttcttcagcaaactgtataaaacacccctggag
gcaatgggagaagagtatgaggagcaatatgtatcggacattctgaactacattgaccat
ggagatccccagattagaggagctacggccattctctgtggaacaattgtcaactccatt
ctaattaaatcccgctttgatgtggaaaaatggctaataaatgtcagaagctcaacagga
aatctcttttccttgatagactgcatacctctgttacagaaaacattgaaagatgagtcc
tctgttacttgcaaactggcttgtacagctgtgaggcattgcatcatgagcttatgcagt
agcagttacagtgaactaggtttgcaattgattgttgacctcctaactctgaagaacagt
tcatattggcttgtaaggacagaacttctggaaacacttgcagaggtagattttcggcta
gtcagcttcttggaaggaaaaactgagagcttgcacagaggtattcatcattatactggt
ctattaaaacttcaggagagagtacttgaaaatgttgtaataagtctgcttggagatgaa
gatccaagagtgagacacgtggctgcagcttcattaatgaggcttgttccaaagctgttt
tataactgtgatcaaggacaggctgacccagttgtggcagtagcacgagaccaaagcagt
gtctacctgaaactcctcatgcatgaaacgcagcccccatctcactttgcagtgagcact
atcaccagaacatacagaggttacaatatgctgcaaagtccaacagatatcactatggaa
aacaacctttcaagggttattgcagcaatttcccatgcattgacaatatccactacaaga
gcacttacgtttggctgctgtgaagctttgtgtcttctctccacaacatttccagtctgc
acctggagtgtgggatggcactgtggtgtttcccagccaagttcttcagatgaagctcag
aagggctgcaccattggtatggctggcttggtcttgtctctcctttcatcagcatggttc
ccactggacctctcagcacatcaggatgctttgattttgactggaaacttgcttgcagca
agtgctcccaagtgcttaaagaatccctggagtgctgaagaagattcaaaccaaggtgct
gctaagcaggaggaaccctggccagctctggcagatcgagcgcttgtcactttagtagaa
cagctcttttctcatctgctgaaggtcattaatatttgtgcacatgtaatggatgatgtt
gctcctggtccagcagtaaaggcagcattaccttctctcacaaacccaccttctcttagt
ccgattcggaggaaggggaaagagagggagtctgtggagcaggcatctgtgccaatgagc
cctaaaaagagtggtgaagcaagtccagcttctaggcaagctgatgctgcagggcctgtt
ccaacaagtaaatcatcttcagtaggaagcttttatcatcttccatcatacctcaagttg
tatgatgtcttgaaagcaacccatgctaattataaggttactttggatctccagaacact
aatgagaagttcggatgtttcttacggtctgccttagatgttctctctcaaatcttggaa
cttgctactcttcaggacattggaaagtgtgtagaagaaattttgggatatctaaaatca
tgtttcaacagagaaccaacaatggcaacagtgtgtgtacagcagctgttgaaaacgttg
tttgggacaaatctggcttctcagtatgatggcttgtcttcaaaccccagcaaagctcaa
ggcaaagctcagcgcttgggttcctccagtctgaggcctggcctctaccactattgcttc
atggcaccgtacacacacttcacacaggcccttgctgatgccagtctgaggaacatggtt
caggctgagcaggagcacgatgcttcaggatggtttgatgtgctgcagaaagtttctaca
cagctgaaaactagtatttccagtgcagcaaaacatcgtgctgataagaatgctattcac
aatcacattcgtttatttgaaccccttgtcataaaagcattgaaacaatacacaacaaca
acgtcagtacagctgcagagacaagttctagacttgcttgctcaactggttcagctgcga
gttaactactgtcttctggattcagatcaggtgtttattggatttgtgctaaagcaattt
gaatacattgaagtaggacagttcagggaatctgaagcaattattcctaatatcttcttt
ttcctggtgttgctatcttatgagcggtatcattccaaacagataattggaattccaaag
atcattcagctgtgtgatggtatcatggccagtgggaggaaagctgttacacatgcaata
ccggctctgcaacccattgttcatgatctctttgtgttaagaggaacaaataaagctgat
gctggaaaagaactggaaacccagaaggaggttgtagtatcaatgctgctgagacttatc
cagtaccatcaggtgctagaaatgttcatcttggtattgcaacagtgtcataaagaaaat
gaagacaaatggaagaggttgtcccggcaaatagctgacatcattctcccaatgcttgca
aaacaacagatgcatatagactctcatgatgctctgggagtattgaacactttgtttgaa
attttggctccttcatcccttcgccctgtggacatgcttttaaggagtatgtttgttact
cctaaaacaatggcatcagtgagcactgtccagctctggatttctggaattttagctatc
cttagagttctgatttcacagtcaacagaagacatcgttctatcccgtatacaggagctt
tccttctcaccatatttgatttcatgtcaagcaatcaacagactgagatgtggagaaaat
aacgtgtccacaccagaggatcgcactgaggtcaaacaggtgaaatacccacctgaggag
acattttccagattcttactacaactggttggcattctgttggaagatattgttaccaag
caattaaaagtggacatgaatgagcagcaacatactttttactgccaggagctgggcaca
ctgcttatgtgcttaatacatatcttcaaatcagggatgtttagaagaatcacagctgca
gccaccagactttttacaggagatggatctgatggtagtttctatacccttgaaagtttg
agtgaccttgttcagtccatgattcccactcatccttctttagttctcctctggtgtcaa
atcctgcttcttgtcaattataccaactacaactggtggtcagaagtgcatcaaacccca
aagcgacacagcctttccaccactaaattgcttagtcctcatatatctggagacagtgac
gaatcagatttggaatctaagcgtggcatgtgcaatcgtgagatagtgagaagaggagca
ctcattctcttttgtgactacgtttgtcaaaacctacatgattcagaacacctgacctgg
cttattgtgaatcatgttcaagacttgattaatctgtcccatgagcctccagtacaagac
tttatcagtgctgttcacaggaattcagcagccagtggtctcttcatccaggccattcag
tcacggtgtgagaatcttgcagctcccacaactctgaagaagaccttgcagtgcttggag
ggaatccacctgagccagtccggggctgtgctgaccctgtacgtggacaagctgctgtgc
actcccttccgagtgctggctcgcatggttgacaccctggcctgccgccgcgtggaaatg
ctgctggcagcaactctgcagaacagcattgctcagttaccagttgaagaactggataga
attcaggagtaccttcaaaacagtggattagcagcaagacaccaaagactttactcgctc
ttggataggtttcgtcttatggtagcaccagacacaaccagtccttcacctctggttacc
tcacacccactagatggagaagaccaaccagctttagagactgtaatcctagacaaagac
tggtatgtgtcactagtgaggtcacagtgttacatcaagtctgactctgcactgctagaa
ggagcagagctggtaaataggattcctcagcctgacctgaactccttcatgaccagcaag
gaattcaacctaagcttgttagcaccttgtttaagcctcggcatgaatgagctctcaagg
gaccagaagaacagcctctttgaaacagctcggagggtaactctggatcatgtgtcttct
gctgtacaaaaccttccagccagccaccaggtttttcagccactattgccaactgagcca
tcagcctactggaaaaaactaagcgatatctttggagatgaggtgatgtatcagtctatg
atgacactttgtcgtgcactggctcagtatttgttgttactctcaaaactaccagctggt
ctccgtgttcctcctgacaaagaggatgatatcctgaaattcgtagtgatgtcagtagag
gcactatcatggcatttagtgcatgaccagattccattaagtgtagatcttcaggctggt
ctggattgttgctgtctgacactacagcagcctagtctttggaatttgctgtcttctgca
gcttatgtgacatatgcttgctccttaattaactgcattagatttatcatagaagcagtt
gctgtggaacctggtaatcaacttcttagtcctgaaagaaagaagaacacttcaaaacct
ttaagtgagggggaaattgactcaaatgcacagaaaacaaaacacattattgcagcatgt
gaaatgatagcggagatggtggaatgcttacagactgtcttgtcattggggcacaaaagg
aacagcagcatccctgcgtttctcactcctgtcctcaagaacatcattatcagtttagca
aggctgcctctagtgaacagttacaccagagtacctcccttggtctggaaattaggctgg
tcaccaaagcctttgggtgactttggcacagtttttcctgaaatcccagtagaatttctt
caagaaaaggaaatatttaaggagttcatctatcgcattaatacacttggatggatcagt
cgtactcagtttgaagagacttgggctactttgcttggtgtgctcgtaactcagcccatt
gtaatggaccaagaggagaaccagcaagaggaagatacggagaggacccaaattaatgtt
cttgcagtgcaagccataacctccctggtgctgagtgcaatgaccatacctgttgcaggc
aatccagcagttagctgtttggaacagcagccccgcaacaaagctttaaaagctctggac
acaaggtttgggaggaagctaagtgttatcaggggaattgttgaacaggaaatccaagca
atggtgtctaagagagataatattgctactcatcacttataccaagcttgggaccctgtt
ccatcactttctcctgctactacaggtgctcttatcagccatgaaaaactcttactgcag
atcaatactgaacgagaaataggagatatggattacaaactgggacaggtctctatacac
tcgatatggttaggaaataatatcactccactgagagaagaagagtggggtgaggatgag
gaagatgagaatgacgtacctgctctttcctcaccaccaacctctcctataaacaccagg
aagcaccgggctggtgtagatatccattcttgttctcagttcttgcttgaactgtacagt
cagtggatattgccatccaaccctagcaagagaacaccagtcattttgatcagtgaagtg
gtgcgctcacttctggcagtgtcagacttatttacagaaaggaatcagtttgagatgatg
tacacaacactgacagagttgcgaaaggtgcatccatcagaagatgagattcttgtccag
tatttgataccagctacttgtaaagctgctgctgttcttggaatggataaagctgtggct
gaaccagtaagtcgactgctggaatcaaccctaagaagcacccatatgccaagtcggatt
ggagctctgcatggaattctttatatccttgagtgtgacttgctcgacgagacagcaaag
caactcattccaattatcagcgagtatctgctctccaatttgagaggagtagcacattgt
gtgaatatccataaccaacagcacatcttggtaatgtgtgcagctgctttctatttgatc
gagaattacccacttgatgtagggcctgaattctctgcaggaattatacagatgtgtgga
gtcatggtgtctggaagtgatgaatcaacaccatccattatttatcactgtgtcctgaga
ggattggaacgactcctcctttcagagcagctttctaggctggacagtgagtcgctggtt
aaactgagtgttgacagggtgaatgtgcagagcccccacagagcaatggcagcccttgga
ttaatgctgacttgcatgtacacaggaaaggaaaaaatcagtcccagccgtataacagat
gcaaatcctggtgctcctgacagtgaatctgtgattgtagctatggaacgagtatctgtc
ctttttgataggatcaggaagggatttccttttgaagctcgagtagtggctcggattctt
ccacagttccttgatgatttcttccccccacaagatgtaatgaacaaagtcattggggaa
tttctgtccaatcagcagccatacccacaattcatggcaacagtagtttataaggtattc
cagacactgcatagcactggacagtcctcaatggtccgtgactgggtgatgctctctctc
tccaatttcacacaaagaacacctgtggcaatggcaatgtggagtctttcctgttttttt
gtcagtgcttccaccagtcagtggatttcagcaattcttccacatattatcagtagaatg
ggaaaatcagagcaagtggatgttaacatcttctgtttggtggccatagacttctaccga
caccagattgatgaagaattggatcggagggccttccagtcggtgtttgaggtggtagca
tctccaggaaccccataccatcgcctactgacttgtttgcaaaatgtccacaaggtcaca
gcatgttga
DBGET
integrated database retrieval system
