Corvus brachyrhynchos (American crow): 103611335
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Entry
103611335 CDS
T08418
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103611335 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbrc03019
]
103611335 (XAB2)
03041 Spliceosome [BR:
cbrc03041
]
103611335 (XAB2)
Messenger RNA biogenesis [BR:
cbrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103611335 (XAB2)
Spliceosome [BR:
cbrc03041
]
Complex B
Other components
Prp19-related factors
103611335 (XAB2)
Complex C
103611335 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_N
TPR_14
HAT_PRP39_C
TPR_12
TPR_2
TPR_16
Motif
Other DBs
NCBI-GeneID:
103611335
NCBI-ProteinID:
XP_017583449
LinkDB
All DBs
Position
Unknown
AA seq
516 aa
AA seq
DB search
MCPRGCPQEDEEVQHEEELLRNPFSVRGWLRYAQARQRGPRPRLNQIYERALRELPGSYK
LWYQYLRQRALRWPCCPQLCPEEAEQYVGGSDGPEVALRWPCCPQLCPEEAEQYVAYLRS
VGRLDEAAQVLARLVNDERFVSREGKSNYQLWQELHELLFQPHGVVLRSLMPPFPCPGLW
QELGGSQGGFGVVLGSLTALFPQLPKATALPAKRAEYFDSSEPVQNRLYKSLKVWSMLAD
LEESLGTFQSTRAVYERILDLRIATPQIVINYALLLEEHGRFEDSFKAYERGIALFRWPH
VGDLWLTYLSKFVARYGGRKLERARDLFEQALDGCPPQHAKSTDRGTPGGTGGQDGHGRV
RGAQRAQGMPGQVPIWARGVGAPVCPGEFLSCPHIHIPVPTALSLSPRPPQVLGDDAARE
LCLRFADMECKLGEVDRARAIYTYCSQICDPRITGSFWQTWKEFEIRHGNEDTIREMLRI
KRSVQATYNTQVNFMASQMLKVSGSATGTVSVLAPG
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgtgtccccgtgggtgtccccaggaggacgaggaggtgcagcacgaggaggagctgctc
aggaaccccttctcggtgcggggctggctccgttacgcccaggcccggcagcgcgggccc
cggccccgcctcaaccagatctacgagagggccctgagggagctgcccggcagttacaag
ctgtggtaccagtacctgcggcagcgggcactgaggtggccctgctgtccccagctgtgc
cccgaggaggccgagcagtacgtggggggttcagatggccctgaggtggcactgaggtgg
ccctgctgtccccagctgtgccccgaggaggccgagcagtacgtggcgtacctgcgctcc
gtgggccgcctggacgaggccgcgcaggtcctggcccggctggtgaacgacgagcgcttc
gtgtcccgggagggcaaatccaactaccagctgtggcaggagctccatgagctgctgttc
cagccccatggggtggttttgaggtctctgatgccacccttcccctgtcccgggctgtgg
caggagctgggggggtcccagggcggttttggggtggttttggggtctctgacagccctg
tttccccagctgcccaaagccacggcgctgccggccaagcgcgccgagtacttcgacagc
tcggagcccgtccagaaccggctctacaaatccctcaaggtgtggtccatgctggccgac
ctggaggagagcctgggcaccttccagtcgacgcgggcggtctacgagcgcatcctggac
ctgcgcatcgccaccccccagatcgtcatcaactacgcgctgctgctcgaggagcacggg
cgcttcgaggacagcttcaaggcgtacgagcgcggcatcgcgctgttccggtggccgcac
gtgggggacctgtggctcacgtacctgtccaagttcgtggcccgttacgggggccggaag
ctggagcgggcacgggacctcttcgagcaggcgctggacgggtgccccccgcagcacgcc
aagagtacggacagggggacaccgggggggacaggaggacaggacgggcacgggagggtc
aggggggcacagagggctcaggggatgccaggccaggtgcccatttgggcacggggagtg
ggtgccccggtgtgcccaggtgagttcctgtcctgtccccacatccacatccctgtcccc
acagctctgtccctgtccccacgtcccccgcaggtgctgggggacgacgcggcgcgggag
ctgtgcctgcgcttcgccgacatggagtgcaaactgggagaggtggaccgggcccgcgcc
atctacacctactgctcccagatctgcgacccccggatcacgggcagcttctggcagacg
tggaaggagtttgagatccggcacgggaacgaggacacgatccgcgagatgctgcggatc
aagcgcagcgtgcaggccacctacaacacccaggtgaacttcatggcctcgcagatgctc
aaggtgtccggcagcgccaccggcacagtgtcagtcctggccccgggataa
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