Corvus brachyrhynchos (American crow): 103611639
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Entry
103611639 CDS
T08418
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cbrc
Corvus brachyrhynchos (American crow)
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbrc03041
]
103611639 (YTHDC2)
Enzymes [BR:
cbrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103611639 (YTHDC2)
Spliceosome [BR:
cbrc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103611639 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
AAA_19
HA2_N
Ank_2
nSTAND3
AAA_22
ATPase
Ank_4
PhoH
AAA_16
AAA_23
Ank
AAA_7
AAA_30
AAA_29
Sigma54_activat
SRP54
ResIII
Motif
Other DBs
NCBI-GeneID:
103611639
NCBI-ProteinID:
XP_017583764
LinkDB
All DBs
Position
Unknown
AA seq
1363 aa
AA seq
DB search
MEFPSSFTRTERAFVHRLCHSLGLISKSKGKGTNRYLTVRKKDGSELKRAVMTCALTPGT
KHAVHTLIRNFPVTNKERTELLPKTERGNAYAVESENKEVNKTSGRLSDGIPQVPVKRGE
SEFDSFRQSLPVFEKQEEIVKIIKGHKVVLIVGETGSGKTTQIPQFILDDCHRNGTPCRI
FCTQPRRLAALAVAERVAAERREKIGQTVGYQIRLESRVSPKTLVTFCTNGILLRTLMAG
DSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQSHANLKLIISSAALDADLFIRYFGCC
PVIHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQQEEKQQSTLTEWCSTQESSSK
LEPERPRSVPRATEECYLLGDGGDIVFNQLTEKDVNCLEPWLIKEMDSCLSNIWLHKDID
AFAQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGASIHCKSSNGWMA
VDWAKRFGQTEVVDLLESYRSGFGNLDESSLVRTSGGDLSAEDRELLTAYHHSFDDEKVD
LDLIMHLLYNICHSCETGAILIFLPGYDEIVSLRDRILFDDRRFADNAHRYQVFMLHSNM
QTLDQKKVLKSPPPGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALSCVTMLKM
VWISKASAIQRKGRAGRCQPGVCFRLFSKLRFENMLEFQTPELLRMPLQELCLHTKLLAP
SSCPVVDFLMKAPDPPPALIVKNALQMLKAIDAMDPWEDLTELGYHLTELPVEPHLGKMV
LCAVVLKCLDPVLTIACALAYRDPFVLPTLASQKRAAMLCRKRFTAGTFSDHMVLLRAFQ
AWQKARSDGWERAFCEKNFLSQATMQIIAGMRTQLLGQLRASGFVRARGGADIRDVNANS
ENWAVVKAALVAGMYPNLVHVDRGSLVLTAPKEKKVRFHPTSVLSQPQYKKIPPVNGQSA
AVQALPTDWLIYDEMTRAHRIANIRCCSAVTPITVALFCGPARLPSNALQASSSCQGDGV
SSDSSDSEMEDRKTSNVSLLKLDEWLHLKLDSEAAGLLLQLRQKWHSLFLRRMRAPSKSW
SQVDEATVRAVVAVLTAEEQSARLQQPSGIGQRPRPMASEDHLLASAWRSTNSRKSTAET
EFSDSSNAEKVLMKSPRPMLHQPKQYKRRNILHSKQTSDDRSDQSSMKSADSSSFPSPCA
SPSSPISGKGSKSPSPRQYMPVRYFIMKSSNFQNIDISQQKGIWSTTPSNEQKLNGAFWE
SVVYLIFSVQGSGHFQGFARMGSSIGCEKSQDWGSAGFGGVFKVEWIRKESIPFPFAHHL
LNPWNGNKKVQISRDGQELEPQVGEQLLQLWDHIPLEGKSSTD
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggaatttccgtcttctttcactagaacggaaagagcgtttgttcaccggctctgtcat
tctcttggacttatatctaaaagtaaaggaaaaggaacaaatcgatacctaactgtaaga
aaaaaggatggatcagaactaaaacgtgcagtaatgacttgtgccttaactcctggtaca
aaacacgctgttcatactttaattcggaattttcctgtcacaaataaagaacgaacagaa
cttctgcccaagacagaacgaggaaatgcctatgctgttgaatctgaaaacaaagaagtg
aacaagacaagcggacgacttagcgatggtatcccccaggttcctgtgaaaagaggggaa
tcagagtttgattccttcaggcaatcactaccagtttttgaaaaacaggaagaaattgtc
aaaataataaagggccataaagttgttttgattgtaggagagactggatcaggaaaaact
actcaaatcccccagtttattcttgatgactgtcacagaaatggaactccctgccgtata
ttttgcactcagccgagacgtttggcagcacttgctgtggctgaaagagtggcagcagaa
agaagagaaaagattggccagacggttggttatcagatccgtttagaaagcagggtttct
ccaaagacactggtaaccttttgcactaatggcatactgcttcgcacgctgatggcagga
gacagcaccctatctactgtgacacatgttattgtggatgaagtacatgagagggatagg
ttcagtgacttcttgctaataaaactgagagatgtactgcaaagccacgctaatttaaaa
ctaattatttctagtgctgctctagatgcagatctctttattaggtattttggatgttgc
ccagtaatacatatccaaggaagaccttttgaagttaaggagatgtttttggaggacatt
ttacgaagtactgggtatacaaacaaagagatggtaaagtacaaaaaagagaagcagcaa
gaagaaaaacagcaaagcactcttactgagtggtgttctactcaagagagcagtagtaag
ctggaacctgagagaccaagatctgtcccaagggcaactgaagagtgttatctgttgggt
gatggtggtgacatagtatttaatcaactgactgaaaaagatgtgaactgccttgaacca
tggttaataaaagagatggattcttgtctttctaacatctggttgcataaagatattgat
gcctttgctcaggtgttccatctcattttaactgaaaatgtcagtgttgattataggcac
agtgaaaccagtgcaactgcactaatgattgcttcagggagaggctttttgagtcaagta
gagcagctgatcagtatgggagcaagtatccactgcaaatcatccaatggctggatggct
gtggactgggctaagcgctttggacagacagaggttgttgacttgttagaatcctacagg
tcaggatttggaaatctggatgaaagttcgctagtccgaacaagtggtggtgaccttagt
gcagaggacagagaactgttgacagcttatcatcacagctttgatgatgaaaaagtggat
ctggacctcattatgcacttgctttataacatctgtcatagttgtgaaactggagcaatt
ttaatatttcttcctggatatgatgagatagttagcctgagggaccgtattctttttgat
gacaggagatttgctgacaatgctcacagatatcaggttttcatgcttcattcaaatatg
cagactttggatcagaagaaagtgcttaaaagtccacctcctggagtgcgcaaaataatt
ctttctacaaatattgcagaaaccagcattacagtcaatgatgttgtatttgttattgac
tcaggcaaggtgaaagagaagtcttttgatgcactgagttgtgttacaatgctaaaaatg
gtgtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgctgtcagcct
ggagtctgttttcgtctcttcagtaagctccgatttgagaatatgttggaatttcagact
ccagaacttctacgaatgccacttcaggagctttgtttacacacaaaacttctggctcca
agtagttgtccagttgttgactttcttatgaaagctcctgatcctccaccagctttaatt
gtgaaaaatgctctgcaaatgctcaaggctatagatgccatggacccttgggaagatctc
actgaacttggttatcacctcactgaattgccagtggagccacacctgggtaaaatggtg
ttgtgcgctgttgttttgaagtgcctggatcctgttcttaccatcgcttgtgctcttgcc
taccgagacccttttgtgctccccacgctggcctctcagaagcgtgcagccatgctgtgc
aggaaacgtttcactgcgggaacgttcagcgaccacatggtgcttctcagggcttttcag
gcgtggcaaaaggcacgcagtgatggctgggagagagccttctgtgaaaagaacttcttg
tctcaagccacaatgcaaatcatcgcaggaatgagaacacaattgcttggccagcttaga
gcctcaggttttgttagagccagaggaggagctgatattagagatgttaatgctaattct
gaaaactgggctgtagttaaagctgccttagtggctgggatgtatcccaatcttgtgcat
gtagacagagggagcctggttttaactgcaccaaaggagaagaaagtgcgatttcatcct
acctctgttctcagtcaacctcagtataaaaagattcccccagtgaatggccaaagtgca
gctgttcaggcactccctacagactggcttatatatgacgaaatgacgagagctcacagg
atagcaaacatcaggtgctgttctgctgtaacgcccatcactgtggcactcttctgcggg
ccagctaggttaccaagtaatgctttacaggcatcttcatcctgtcaaggagatggggta
tccagtgatagcagtgacagtgagatggaggacagaaagacttctaatgtatcactactg
aagctagatgaatggctccacctcaaactggactctgaagctgctggtttgctgttgcaa
ctcagacaaaagtggcatagcttatttctgcgtcgtatgcgagctccgtctaaatcgtgg
tctcaagttgatgaagcaactgtaagagcagttgtagctgttttaactgctgaagaacag
tctgcacgtttgcagcagccttcaggaattggtcagagaccaagacctatggcttctgaa
gatcatcttttagcatctgcatggaggtcaactaacagcagaaaaagtacagcagaaact
gaattctctgactcctctaatgctgaaaaagttctaatgaagtctccacgtcccatgctt
catcagccaaagcagtacaaacgaagaaacattttgcactccaaacaaacttcagatgac
agatcagatcagtcatcaatgaagtctgcagacagcagtagcttccctagcccctgtgct
agcccatcgtctccaatatctggaaagggttctaaatcaccttcaccaagacaatatatg
ccagttcggtactttataatgaaaagtagcaacttccagaacattgatatttctcagcag
aagggtatatggtccactacgccaagtaacgaacaaaaactgaatggagccttttgggag
agcgtagtttacttaatattttctgttcaagggtctggacacttccagggttttgctaga
atgggttcatcaataggatgtgagaaaagtcaggactggggatctgctggatttggaggt
gtatttaaggtggagtggatacgcaaagaaagcattccttttccgtttgcacaccatttg
ctcaacccttggaatggcaataagaaagtacaaataagcagagatggccaggagctggaa
ccacaagttggagagcagttgctgcagctttgggaccatattcctttggaaggaaaaagc
tcaactgattaa
DBGET
integrated database retrieval system
