Corvus brachyrhynchos (American crow): 103611855
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Entry
103611855 CDS
T08418
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103611855 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbrc03019
]
103611855 (PATL1)
Messenger RNA biogenesis [BR:
cbrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103611855 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
103611855 (PATL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
103611855
NCBI-ProteinID:
XP_008627645
LinkDB
All DBs
Position
Unknown
AA seq
839 aa
AA seq
DB search
MALSPVPVPKPGAVPALIPSDGHKEGAEGRDEVEPPLHLGHPDPPEAAAGGGPRSPRGVA
EVGDDVGSEAMRKLVPHGGHTSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDD
DWQEAHERLAELEDRAGSSRDPDGPVGNDGDVLGDPEDALAERLTRLVIDSELEDPAIMQ
AVHTRDPPQPGGLNSSIWDSSAVLRRIRGPLLAQEMPSVSVLDYALPQRPPQARDEERDP
SERALPRRSSSPVIGSPPVRAVPIGTPPKQAAIPNFNQQILCPKPVHIRATMQQRYPAPY
GERMSPNQLCNVPNSSLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVG
SPLPSVNPKLLQGRVGQMMSPAGGFRAFFGAPPAPPPSQLPHPQGPGSHLQNLRPQPQMF
RPDTTHLHPQHRRLLHQRQQQNRNQHRSLNGSGGDRRGQRSSHQEQIRKDPYANLMLQRE
KDWVSKIQMMQLQSTDPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKL
EHTYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKT
YSLLLDVEDYERRYLLSLEGERPALMGERKQKICDMYDNLRGKAPGQDRLSDDHFMQIMC
IRKGKRLVARILPFLAPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPL
GTVTSLVQQLTNLPQSAAAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNTELMQD
NQWTELMLMATRELLRIPQGALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLVHGIR
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggccctgtcccctgtgcctgtccccaagcccggggctgtccctgcgctaatccccagt
gacgggcacaaggaaggcgccgaggggagggacgaggtggagccaccccttcacctggga
cacccggacccgccggaggcggcagctgggggtggcccccggagcccccggggggtggca
gaggtgggggacgatgtgggctcggaggccatgaggaagctggtcccccacgggggtcac
acgtccctggaggactgcccgctggacgaggatgaagacgccttccaggccctgggggag
gaggatgaagacatcgaccagttcaacgatgacaccttcggcgctggggccgtcgatgac
gactggcaggaggcccatgagcggctggcggagctggaggacagggccgggtcgagccgg
gacccggacggccccgttgggaatgacggggacgttctgggcgatcccgaggacgcgctg
gccgagcggctgacgcggctcgtcatcgacagcgagctggaggacccggccatcatgcag
gccgtgcacaccagggatcccccgcagcctggagggctgaattccagcatctgggacagc
tcggccgtgctgcggcgcatccggggaccgctcctcgctcaggagatgccgtcggtgtcc
gtgctggattacgccctgccccagaggcctccgcaggctcgggatgaggagcgggatccg
tcggagcgggcgctgccccggcgctcctcgtcccccgtcatcgggagccccccggtccgg
gccgttcccatcggcaccccccccaaacaggctgccatcccaaacttcaaccagcagatc
ctgtgtcccaagcctgtccacatccgagctaccatgcagcagcgttatcccgctccctat
ggagagaggatgtcccccaaccagctctgcaatgttccgaattcctccctcctgggccac
ccgttcccccacagcgtctctcccgtcctcacacacctgcagagagcccagctgctcgga
ggagcccaggccggccgaatgtcccccagccagtttgcccgggtgtccgggctggtgggg
agcccgctgccctccgtgaatcccaagctgctccagggcagagttgggcagatgatgtcc
ccggccggagggttccgtgcctttttcggggctccccccgccccgcccccctcgcagctg
ccgcaccctcagggccccggatcccacctgcagaacctgaggccgcagccccagatgttc
cggccggacacgacgcatttgcacccccagcaccgccggctcctgcaccagcggcagcag
cagaaccggaaccagcaccggagcctcaacggctccgggggggaccggcgggggcagcgg
agcagccatcaggagcagatccgtaaggatccctacgccaacctcatgctgcagcgggaa
aaggactgggtgtccaagatccagatgatgcagctgcagagcactgacccctacctggat
gattattattaccagaactacttccagaagctggagaagttggcagcagccgaggaagtg
cacggtgacggtcccaagaaggagcgcactaaactcatcacccctcaggtggccaagctg
gagcacacctacaagccagtgcagtttgagggctcgctgggaaaactcaccgtctccagc
gtcaacaacccccggaagatgatcgacgccgtggtgacgtcccgcagcgaggatgacgag
acgaaggagaagcaagtccgggataagaggcggcagaccctcgtcacgatcgagaagacg
tacagcctcctcctggacgtggaggactacgagcgccgctacctcctgagcctggaaggg
gagcggccagccctgatgggagagaggaagcagaagatctgtgacatgtatgacaatctg
agggggaaggcgcctgggcaggacaggctgagcgatgaccacttcatgcagatcatgtgc
atccggaaaggaaaacgcctggtggcccggatccttcccttcctggctccggagcaagcg
gccgacgtgctcatggccacggccaggaacctgcccttcctcatcaagaaggatgctcag
gatgaggtgcttccctgcctcttgaggcccttttcccacgtcctctaccaccttcccttg
ggaacagtcaccagccttgtgcagcagctcacaaacctacctcagagcgccgccgctccc
accaacctgcacctcactgctgtgctccaaaacaagttcggtctgtccctgctgtacctg
gtcctgagccgaggggaggaattgcagagctcggacacaaacacggagctgatgcaggac
aaccaatggacggagctgatgctgatggcgacccgggagctcctgcggatccctcaggga
gccttggcaaagcccgtgtccatcccctccaacttgatctccctcttctctcgctacgtt
gaccagcagaagctgaacctgctggagacgaaattgcacttagtgcacgggatccggtag
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