KEGG   Corvus brachyrhynchos (American crow): 103612694
Entry
103612694         CDS       T08418                                 
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1
  KO
K12828  splicing factor 3B subunit 1
Organism
cbrc  Corvus brachyrhynchos (American crow)
Pathway
cbrc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cbrc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103612694 (SF3B1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cbrc03041]
    103612694 (SF3B1)
   03036 Chromosome and associated proteins [BR:cbrc03036]
    103612694 (SF3B1)
Spliceosome [BR:cbrc03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    103612694 (SF3B1)
 Complex B
    103612694 (SF3B1)
 Complex C
   U2 SnRNP specific factors
    103612694 (SF3B1)
Chromosome and associated proteins [BR:cbrc03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    103612694 (SF3B1)
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG DUF2298
Other DBs
NCBI-GeneID: 103612694
NCBI-ProteinID: XP_017584654
LinkDB
Position
Unknown
AA seq 1389 aa
MPVRPAPRKSPLSVERKFSVIRAIFGASPPTALTGSALTGSALTGSALTGSDLLCFVLIY
IRNSLIENYLWMVVVHCEYYILYVCVTRLLCVCGFTLDIEAQIREIQGKKPALDEAQGVG
LDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYPSTSLLGQKKPGYHAPVALLND
IPQSTEQYDPFAEHRPQKIADREDEYKKHRRMMIISPERLDPFADGGKTPDPKMNARTYM
DVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAASQPPSKRKRRWDQTADQTPGATPKK
LSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRDTPG
HATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRK
SRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDER
NRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKS
VNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAA
LRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL
VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVV
ASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLV
DEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIP
LMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFF
KHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKI
MGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGT
VLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILG
ALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREW
MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVA
IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLED
ALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALE
GLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTY
IRYELDYIL
NT seq 4170 nt   +upstreamnt  +downstreamnt
atgccagtgcggccagcccccaggaagagcccactgtctgtggagaggaagttttcagta
atcagagccatctttggcgcttccccgcccaccgccctcaccggaagtgccctcaccgga
agtgccctcaccggaagtgccctcaccggaagtgatctgctgtgttttgtcttaatttat
atccgtaattcactaattgaaaactacctctggatggtggttgtgcactgtgagtattac
atcttgtatgtatgtgtaacaagacttctttgtgtgtgtggctttaccctagatatcgaa
gcacaaattcgagaaattcaaggaaaaaagcctgctctcgatgaagcacaaggagtaggc
cttgattccacaggatattatgatcaagaaatttatggtggcagcgacagcagatttgct
ggatatgtcacttctattgcagcaaccgaattggaagatgatgatgatgactacccttcc
acaagtttgctcggccagaagaagccagggtaccatgctccagtggcattgcttaatgac
ataccacagtctactgaacagtatgatccttttgcagaacaccgtcctcaaaagattgca
gatcgggaagatgagtacaaaaagcacaggcggatgatgataatttcccctgagcgtctt
gatccttttgcagatggagggaagactccagaccctaaaatgaatgccagaacatacatg
gatgttatgcgtgaacagcatttaacaaaagaagagagggaaattaggcaacaactagct
gaaaaagctaaagctggagagcttaaagtcgtcaatggagccgcttctcagccaccttca
aaacgcaaacggcgttgggatcagacagctgatcagactcctggtgctacacctaaaaaa
ttgtccagttgggatcaagcagagactcctggacacaccccatctctgcgatgggatgaa
actccaggccgtgcaaagggcagcgaaactccaggtgccaccccaggttcaaaaatctgg
gatccgactcccagtcataccccagcaggagctgcaacacccggccgggacacgcccggt
cacgcaacaccaggccacggaggcgccacttccagtgcacggaaaaatcggtgggatgaa
acacccaaaacagaaagagatactccgggccatggcagtggatgggctgagacacctcgt
acagatagaggtggtgactccataggtgagacaccaaccccaggagcaagcaaaaggaaa
tcacgctgggatgaaacgcctgcgagccagatgggtggcagcactcctgttctgacacct
ggcaaaacacccatcggtacaccagctatgaacatggcaactcctacaccaggtcacatc
atgagcatgactcctgaacagctgcaggcttggcgatgggagagggaaattgatgagaga
aacagaccactttctgatgaggagttggatgctatgtttccagaaggatataaggttctc
ccacccccagctggttacgtgcccatccgtactcctgctcggaagctcacagcaactcca
acccccctggggggtatgacaggattccacatgcagacagaggaccgcactatgaagagc
gttaatgaccagccatctggcaacctgccgttcctgaaaccagatgatatccagtacttt
gacaagctgctggttgatgttgatgaatcaactctgagtcctgaggaacagaaggagaga
aaaataatgaaattacttctgaaaataaagaatggcacacctcccatgcgaaaggctgcg
ttgcggcaaattactgataaagctcgggagttcggagcagggccgttgttcaatcagatt
ctgcctctgctgatgtcaccaacactcgaagatcaggagcgtcacttgcttgtcaaagtc
atcgacagaattctgtacaaattggatgacttggtccgaccatacgtacacaagatcctt
gtcgtcattgaaccattgctgattgatgaagactactatgctagagtggaaggcagagaa
attatttcaaacttggctaaggctgctggtttggcaacaatgatctccacaatgcgacct
gatattgataacatggatgaatatgtcagaaatacaacagctcgagcctttgctgttgtt
gcttctgctctgggcattccttctctgttgcccttcttgaaagctgtctgtaaaagcaaa
aagtcctggcaggccaggcacactggcatcaagattgtacagcagattgctattcttatg
ggttgtgctatcctgcctcatctccggagcttggttgaaattattgaacatgggctggtg
gatgagcagcagaaagttcgcaccatcagtgctttggccattgctgctttggctgaggca
gccactccctatggtatcgagtcctttgattctgtcctgaagcctttgtggaagggtata
cgtcagcacagaggaaagggtttggctgcatttttgaaggctattggttacctgattcca
ctcatggatgccgagtatgcaaactactacaccagagaagtcatgctaattcttatcaga
gagttccagtctcctgatgaagagatgaaaaaaattgtgttgaaggtggtaaagcagtgc
tgtggtacggatggtgttgaagcaaactacattaaaacagaaatcttgccacctttcttc
aaacatttctggcagcacagaatggcactggacagaagaaattacagacagttggttgat
acaactgtggagctggcaaataaagttggagcagcagaaattatttctagaattgtggat
gatctgaaagatgaggctgagcagtacagaaaaatggtcatggaaacaattgagaagatc
atgggaaatctgggggcagctgacattgatcataaactggaagaacagctcattgatggt
attttgtacgccttccaggaacagacaacagaggattctgtgatgctgaatggttttggc
acagtggttaatgctctaggcaaaagagttaaaccctacttgccacagatctgtggtaca
gttttgtggcgtttgaacaacaaatcagccaaagtcaggcagcaggccgctgacctgatc
tctcgtactgcagttgtcatgaagacctgtcaagaggaaaaactgatgggacacttgggt
gttgttttgtatgagtacctgggtgaagaatatcctgaagtactgggcagcatacttgga
gcgcttaaggctattgtgaatgttataggtatgcacaagatgacgccaccaatcaaagac
ctgctgccacggctgacacctattttgaagaacagacatgagaaagtacaggaaaattgt
attgatcttgttgggcgtattgcagacagaggtgcagagtatgtttctgcaagagaatgg
atgaggatctgctttgaactgcttgagttactaaaagctcacaagaaagctatcagaaga
gccacagtgaacacttttggttatattgcaaaagctattggacctcacgatgtattggcc
accctgctgaacaacttgaaagtacaggaaaggcagaacagagtatgtactacagtagca
attgctattgtggctgaaacatgctcacctttcacagtgctgcctgcactcatgaatgaa
tacagagttccagaactgaatgtccagaatggtgtgttaaaatctctttctttcctgttt
gaatacattggagagatgggaaaagactacatttatgctgttacaccattgcttgaagat
gctttaatggacagggatcttgtacacagacagacagccagtgctgtggtgcagcatatg
tccctcggtgtttatgggttcggctgtgaagattcccttaatcacttgttaaattacgtg
tggcctaatgtgtttgaaacctctcctcacgtcatccaggcagttatgggggctctggag
ggcctcagagtcgctattgggccctgcaggatgttgcagtattgtttacagggtttgttt
caccctgccaggaaagtcagagatgtttattggaagatctataattcaatctacattgga
tcacaggatgctctgatagcacattatccaagaatctataatgatgaaaagaacacctat
attcgttatgaacttgattacatcttataa

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