Corvus brachyrhynchos (American crow): 103612694
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Entry
103612694 CDS
T08418
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103612694 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cbrc03041
]
103612694 (SF3B1)
03036 Chromosome and associated proteins [BR:
cbrc03036
]
103612694 (SF3B1)
Spliceosome [BR:
cbrc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103612694 (SF3B1)
Complex B
103612694 (SF3B1)
Complex C
U2 SnRNP specific factors
103612694 (SF3B1)
Chromosome and associated proteins [BR:
cbrc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
103612694 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
DUF2298
Motif
Other DBs
NCBI-GeneID:
103612694
NCBI-ProteinID:
XP_017584654
LinkDB
All DBs
Position
Unknown
AA seq
1389 aa
AA seq
DB search
MPVRPAPRKSPLSVERKFSVIRAIFGASPPTALTGSALTGSALTGSALTGSDLLCFVLIY
IRNSLIENYLWMVVVHCEYYILYVCVTRLLCVCGFTLDIEAQIREIQGKKPALDEAQGVG
LDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYPSTSLLGQKKPGYHAPVALLND
IPQSTEQYDPFAEHRPQKIADREDEYKKHRRMMIISPERLDPFADGGKTPDPKMNARTYM
DVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAASQPPSKRKRRWDQTADQTPGATPKK
LSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRDTPG
HATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRK
SRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDER
NRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKS
VNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAA
LRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL
VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVV
ASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLV
DEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIP
LMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFF
KHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKI
MGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGT
VLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILG
ALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREW
MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVA
IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLED
ALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALE
GLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTY
IRYELDYIL
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcggccagcccccaggaagagcccactgtctgtggagaggaagttttcagta
atcagagccatctttggcgcttccccgcccaccgccctcaccggaagtgccctcaccgga
agtgccctcaccggaagtgccctcaccggaagtgatctgctgtgttttgtcttaatttat
atccgtaattcactaattgaaaactacctctggatggtggttgtgcactgtgagtattac
atcttgtatgtatgtgtaacaagacttctttgtgtgtgtggctttaccctagatatcgaa
gcacaaattcgagaaattcaaggaaaaaagcctgctctcgatgaagcacaaggagtaggc
cttgattccacaggatattatgatcaagaaatttatggtggcagcgacagcagatttgct
ggatatgtcacttctattgcagcaaccgaattggaagatgatgatgatgactacccttcc
acaagtttgctcggccagaagaagccagggtaccatgctccagtggcattgcttaatgac
ataccacagtctactgaacagtatgatccttttgcagaacaccgtcctcaaaagattgca
gatcgggaagatgagtacaaaaagcacaggcggatgatgataatttcccctgagcgtctt
gatccttttgcagatggagggaagactccagaccctaaaatgaatgccagaacatacatg
gatgttatgcgtgaacagcatttaacaaaagaagagagggaaattaggcaacaactagct
gaaaaagctaaagctggagagcttaaagtcgtcaatggagccgcttctcagccaccttca
aaacgcaaacggcgttgggatcagacagctgatcagactcctggtgctacacctaaaaaa
ttgtccagttgggatcaagcagagactcctggacacaccccatctctgcgatgggatgaa
actccaggccgtgcaaagggcagcgaaactccaggtgccaccccaggttcaaaaatctgg
gatccgactcccagtcataccccagcaggagctgcaacacccggccgggacacgcccggt
cacgcaacaccaggccacggaggcgccacttccagtgcacggaaaaatcggtgggatgaa
acacccaaaacagaaagagatactccgggccatggcagtggatgggctgagacacctcgt
acagatagaggtggtgactccataggtgagacaccaaccccaggagcaagcaaaaggaaa
tcacgctgggatgaaacgcctgcgagccagatgggtggcagcactcctgttctgacacct
ggcaaaacacccatcggtacaccagctatgaacatggcaactcctacaccaggtcacatc
atgagcatgactcctgaacagctgcaggcttggcgatgggagagggaaattgatgagaga
aacagaccactttctgatgaggagttggatgctatgtttccagaaggatataaggttctc
ccacccccagctggttacgtgcccatccgtactcctgctcggaagctcacagcaactcca
acccccctggggggtatgacaggattccacatgcagacagaggaccgcactatgaagagc
gttaatgaccagccatctggcaacctgccgttcctgaaaccagatgatatccagtacttt
gacaagctgctggttgatgttgatgaatcaactctgagtcctgaggaacagaaggagaga
aaaataatgaaattacttctgaaaataaagaatggcacacctcccatgcgaaaggctgcg
ttgcggcaaattactgataaagctcgggagttcggagcagggccgttgttcaatcagatt
ctgcctctgctgatgtcaccaacactcgaagatcaggagcgtcacttgcttgtcaaagtc
atcgacagaattctgtacaaattggatgacttggtccgaccatacgtacacaagatcctt
gtcgtcattgaaccattgctgattgatgaagactactatgctagagtggaaggcagagaa
attatttcaaacttggctaaggctgctggtttggcaacaatgatctccacaatgcgacct
gatattgataacatggatgaatatgtcagaaatacaacagctcgagcctttgctgttgtt
gcttctgctctgggcattccttctctgttgcccttcttgaaagctgtctgtaaaagcaaa
aagtcctggcaggccaggcacactggcatcaagattgtacagcagattgctattcttatg
ggttgtgctatcctgcctcatctccggagcttggttgaaattattgaacatgggctggtg
gatgagcagcagaaagttcgcaccatcagtgctttggccattgctgctttggctgaggca
gccactccctatggtatcgagtcctttgattctgtcctgaagcctttgtggaagggtata
cgtcagcacagaggaaagggtttggctgcatttttgaaggctattggttacctgattcca
ctcatggatgccgagtatgcaaactactacaccagagaagtcatgctaattcttatcaga
gagttccagtctcctgatgaagagatgaaaaaaattgtgttgaaggtggtaaagcagtgc
tgtggtacggatggtgttgaagcaaactacattaaaacagaaatcttgccacctttcttc
aaacatttctggcagcacagaatggcactggacagaagaaattacagacagttggttgat
acaactgtggagctggcaaataaagttggagcagcagaaattatttctagaattgtggat
gatctgaaagatgaggctgagcagtacagaaaaatggtcatggaaacaattgagaagatc
atgggaaatctgggggcagctgacattgatcataaactggaagaacagctcattgatggt
attttgtacgccttccaggaacagacaacagaggattctgtgatgctgaatggttttggc
acagtggttaatgctctaggcaaaagagttaaaccctacttgccacagatctgtggtaca
gttttgtggcgtttgaacaacaaatcagccaaagtcaggcagcaggccgctgacctgatc
tctcgtactgcagttgtcatgaagacctgtcaagaggaaaaactgatgggacacttgggt
gttgttttgtatgagtacctgggtgaagaatatcctgaagtactgggcagcatacttgga
gcgcttaaggctattgtgaatgttataggtatgcacaagatgacgccaccaatcaaagac
ctgctgccacggctgacacctattttgaagaacagacatgagaaagtacaggaaaattgt
attgatcttgttgggcgtattgcagacagaggtgcagagtatgtttctgcaagagaatgg
atgaggatctgctttgaactgcttgagttactaaaagctcacaagaaagctatcagaaga
gccacagtgaacacttttggttatattgcaaaagctattggacctcacgatgtattggcc
accctgctgaacaacttgaaagtacaggaaaggcagaacagagtatgtactacagtagca
attgctattgtggctgaaacatgctcacctttcacagtgctgcctgcactcatgaatgaa
tacagagttccagaactgaatgtccagaatggtgtgttaaaatctctttctttcctgttt
gaatacattggagagatgggaaaagactacatttatgctgttacaccattgcttgaagat
gctttaatggacagggatcttgtacacagacagacagccagtgctgtggtgcagcatatg
tccctcggtgtttatgggttcggctgtgaagattcccttaatcacttgttaaattacgtg
tggcctaatgtgtttgaaacctctcctcacgtcatccaggcagttatgggggctctggag
ggcctcagagtcgctattgggccctgcaggatgttgcagtattgtttacagggtttgttt
caccctgccaggaaagtcagagatgtttattggaagatctataattcaatctacattgga
tcacaggatgctctgatagcacattatccaagaatctataatgatgaaaagaacacctat
attcgttatgaacttgattacatcttataa
DBGET
integrated database retrieval system