Corvus brachyrhynchos (American crow): 103612800
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Entry
103612800 CDS
T08418
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain isoform X1
KO
K19720
collagen type III alpha
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
103612800 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cbrc00536
]
103612800 (COL3A1)
Glycosaminoglycan binding proteins [BR:
cbrc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103612800 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
103612800
NCBI-ProteinID:
XP_017584502
LinkDB
All DBs
Position
Unknown
AA seq
1458 aa
AA seq
DB search
MMSSVQKVTLLILAVFQPSVILAQQVVTGCTHLGQAYADRDVWKPEPCQICVCDSGSVLC
DDIICDDQELDCPNPEIPFGECCPVCPQTTTPPPRTPGVVSRGPKGGPGSPGVPGRNGPP
GPPGQPGSPGAPGPPGICQSCPSISGGSFSPQYDSYDVKAGGAGIGYPQPISGFPGPPGP
SGPPGPPGHAGPPGSAGYQGSPGEPGQPGPPGPPGPVGMIGPVGPPGKDGEPGRPGRNGD
RGIPGLPGHKGHPGMPGMPGMKGQRGFDGKDGAKGDSGAPGPKGETGLPGVNGAPGQPGP
RGPAGERGRPGNPGGPGAHGKDGSPGAAGPPGPPGPPGTAGFPGSPGFKGEAGPPGPAGA
SGSPGERGEPGPQGHAGPPGPQGPPGRAGSPGNKGEMGPSGIPGAPGLPGGRGLPGPPGA
SGNPGAKGSPGDPGKDGAKGEPGPKGERGENGTPGAPGPPGEEGKRGANGEPGQNGVPGT
PGERGSPGFRGLPGSNGLPGEKGPAGERGSPGPPGPSGPAGERGQDGGPGLPGIRGLPGI
PGSPGSDGKPGPPGNQGESGRSGPPGPAGPRGQPGVMGFPGPKGNEGAPGKNGERGPGGP
PGTPGPAGKNGDVGLPGPPGPTGASGERGEPGPAGPPGLQGLPGGPGPAGENGKPGEPGP
KGDIGGPGFPGPKGENGIPGERGAQGPPGPPGTRGGPGPAGTEGAKGPPGPPGPPGGTGL
PGLQGMPGERGASGSPGPKGERGEPGGKGADGLPGARGERGNVGPIGPPGPAGPPGDKGE
TGPAGAPGPMGSRGGPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPPGLRGEAGPPGA
AGPQGGPGAPGPPGPQGIKGDRGSPGGPGAAGFPGARGLPGPPGNNGSPGPPGNAGPAGK
DGPPGPPGSSGAPGGPGPAGIRGEPGAPGEKGSPGARGERGAPGEPGPQGIVGGRGNTGL
PGLRGPSGPPGMAGARGEDGKPGTNGIPGERGAPGPQGPVGQRGLPGEPGRDGNPGSDGL
PGRDGSPGGKGDRGESGSPGPPGPPGHPGPAGNAGAPGKAGERGFQGPPGPPGSTGPAGA
RGPAGPQGPRGDKGEPGERGSNGIKGHRGFPGTPGLPGPPGPLGPQGAIGGPGASGARGP
PGPAGPPGKDGTSGYPGPIGPPGPRGTRGESGPAGPPGQPGLPGPSGPPGPCCGGGAIGG
EKGPVLYGQYEFRDDPKENDINLGDIISSMKSINNQIENIISPDGSQKNPARNCRDLKFC
HPELKSGEYWVDPNQGCKMDAIKVYCNMETGETCLSANPRTVPRKNWWTSANSGKKHIWF
GESMDGGFQFSYGDPELPEDVSEVQLAFLRILSSRASQNITYHCKNSIAYMDHDSGNVKK
ALKLMSSMESEIKAEGNSKFTYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDIAPLD
IGGPDQEFGVDIGPVCFL
NT seq
4377 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctctgtgcaaaaagttactttgctcattcttgccgtgtttcaaccctcagtt
attttggcacaacaagtcgtcacaggatgtacccatcttgggcaggcttatgctgacagg
gatgtttggaaaccagagccatgccaaatctgcgtgtgcgactcgggatctgttctctgc
gatgacatcatctgtgatgatcaggagctggactgccccaacccagagattccttttgga
gagtgctgtccagtttgtccacaaacaacaacaccacctccaagaactcctggagtagtc
agccgaggccccaaaggaggccctggctctcctggagttccaggcagaaatggtccccct
ggcccaccgggacaaccaggaagccctggagctcctgggccccctggaatctgccagtca
tgtcccagtataagtggaggtagtttttctccacagtatgactcctatgatgtcaaggct
ggtggagctggtatcgggtacccacaacccattagtggctttccaggaccccctggcccc
agtggcccccctggcccacctggtcatgcaggtccccctggctctgctggataccaagga
tcccctggagaaccaggacaacctggccctcctggacctccaggcccggttggaatgata
ggcccagttggtccaccaggaaaagatggagaaccaggaagaccaggcaggaatggagat
cgtggaatccctggattaccgggtcacaaaggacaccctggaatgcctgggatgcctggg
atgaaaggtcaacgaggttttgatggaaaagatggtgccaaaggtgacagtggtgctcct
ggtccaaagggtgaaactggtcttcctggagtgaatggagcaccgggccaaccgggacca
agaggtccagctggagaaagaggaagacctggaaatcccggtggccctggtgcccacggc
aaagacggatctccaggagcagcaggcccacctggtcccccaggtccccctggaactgca
ggatttccaggctctccaggttttaagggtgaagctggtcctcctggtcctgctggtgct
agtggtagtcctggagagagaggagaacctggtcctcagggtcatgccggcccacctggg
ccccaggggcctcctggaagagctggaagccctggcaacaagggtgaaatgggaccttct
ggtattcctggtgctcctggtctgccaggaggccgtggtcttcctggtcctccaggtgca
agtggaaaccctggggcaaaaggcagtccgggagaccctggtaaggatggcgcaaaagga
gagccaggcccaaaaggcgagcgtggtgaaaatggcaccccaggcgctcctggacctcct
ggtgaggaaggaaaaagaggtgcaaatggtgaacccgggcagaatggagtacctggtacc
cctggagaaaggggctcccctggtttccgtggcttacccggtagcaatggacttccaggt
gaaaagggtcctgcaggtgagcgtggcagcccaggtccccctggccccagcggacccgca
ggagagcgtggacaagacggaggcccaggtcttcctggaataagaggcttgcccggaatt
ccaggaagcccaggcagtgatgggaaacctggccctcctggtaatcagggtgaatctgga
cgctctggcccccctggccctgcaggcccacgtggccagccaggtgtgatgggtttccct
ggtcctaagggcaatgagggtgcaccaggcaagaatggagaaagaggccccggtggacca
cctggaacacctggtcctgctgggaagaatggtgatgttggccttccaggtcctccagga
cctactggtgcttctggggagagaggagaaccaggaccagcaggcccacctggcctccag
ggattgcctggtggaccaggaccagctggagagaatggaaagcctggagaaccagggcca
aaaggtgatattggaggacccggattccctggccctaagggtgaaaatggtatcccagga
gaacgtggtgcacaaggtcctccaggacctccgggaacaagaggtggaccaggtcctgct
ggcacagaaggtgccaagggtcctcctggcccacctggtccccctggaggcacaggactg
cctggcttacagggaatgccaggagaaagaggagcttctggaagccctggaccaaaaggg
gagaggggagaacctggtggcaaaggtgctgatggccttcctggtgcaagaggagagaga
ggcaatgtaggtcccatcggtcctcctggtcctgccggcccacctggagataagggggag
actggcccagcaggtgcccctggtccaatgggttcccgtggaggtcctggtgaacgagga
gaacaaggtcttcctgggcctgctggcttccctggagccccaggccaaaatggggaacct
ggtggaaaaggagaaagaggcccccctggtctaagaggagaggctggaccccccggagca
gcaggcccacaaggtggccctggagccccaggtccacctggtccccaaggaataaaagga
gaccgtggatctcctggcggccctggtgctgctggtttccctggtgcccgcggtctacct
ggtccccctggtaacaatggtagtccaggtccccctggtaatgcaggacctgcaggcaag
gatgggcctcccggaccccctggtagttctggtgctcctggaggcccaggacctgctgga
atcagaggtgagcccggcgcaccaggagaaaaagggtccccaggcgcacgaggagaaagg
ggggcaccaggtgagccaggtcctcaaggcattgttggcggccgggggaacacgggtctg
ccaggtctgcgcggccccagtggcccacctgggatggcaggggccaggggtgaagatggt
aaaccaggcaccaacggcatcccaggagaacgcggtgctcctggtccccaaggtcctgtt
ggacaaagaggcttacctggagagcctggcagagatggtaacccgggctccgatggcttg
cctggacgtgatggatccccaggaggcaaaggtgaccgtggtgaaagtggctctcctggc
cctccaggaccccctggccaccctggacctgcaggtaatgctggtgcacctggaaaagcc
ggtgaaagaggatttcagggtccacctggccctcctggctctactggtcctgctggtgct
cgtggtcctgctggtcctcaaggtcctcgtggtgataaaggtgaacctggcgaacgaggc
agcaatggcataaagggtcacagagggtttcctggtacccccggtctccctggtcctcct
ggtcccctgggtccacaaggcgcaattggaggtccaggagcttcaggtgcaaggggtccc
ccaggaccagctgggccacctggaaaggatggcaccagtggctacccaggtccaattggt
cctccaggcccccgcggtaccagaggcgaaagtggccctgccggtccaccagggcagcct
ggtcttcctggtccttctggtcctcctggtccatgttgtggtggtggtgctattggaggt
gagaaaggtccagttctctacggacaatatgaatttcgagatgatcccaaagaaaatgat
atcaatctgggtgacatcatatcttcaatgaaatcaattaacaaccagattgaaaacatc
attagtcctgatgggtcccagaagaatccagctcgtaactgccgagacctgaaattctgc
catcccgagctcaagagcggagagtactgggttgatcccaaccaaggctgcaagatggat
gctattaaagtctactgcaatatggaaactggtgagacctgcctcagcgctaaccccagg
actgtgccaaggaaaaactggtggaccagtgcaaacagtggaaagaaacacatttggttt
ggagaatctatggatggaggcttccagttcagctatggagatcctgagcttccagaggat
gtctccgaagttcagctggccttcctgcgcattctctccagccgtgcctcccagaacatc
acctaccactgcaagaacagcattgcctacatggaccacgacagtgggaatgttaaaaaa
gctctgaaactgatgagctctatggaaagtgagatcaaggctgaaggaaacagcaaattc
acatatgctgttctagaagatggctgtactaaacacactggtgaatggggtaaaaccgtt
tttgaatacaggacgcgcaagacaatgaggttgccagtggttgatattgcaccattagat
attggtggtcctgatcaggaatttggtgtggacattggcccagtctgcttcttataa
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