Corvus brachyrhynchos (American crow): 103614885
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Entry
103614885 CDS
T08418
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
cbrc
Corvus brachyrhynchos (American crow)
Pathway
cbrc03015
mRNA surveillance pathway
cbrc03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cbrc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103614885 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
103614885 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbrc03019
]
103614885 (CPSF6)
Messenger RNA biogenesis [BR:
cbrc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
103614885 (CPSF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
103614885
NCBI-ProteinID:
XP_017588583
LinkDB
All DBs
Position
Unknown
AA seq
680 aa
AA seq
DB search
MQLNQSTNPCQYQSPLSTRRNGHERACLVKENKAGPSQEQEEEAEQEGTTQSLFLRELWD
MQKDFSHQADCLRRGYVKDPEGYWWVFSTTALEAEEVKQLPALPGLSEDPSVVGLLKEAE
YGGHDQIDLYDDVISPSANNGDAPEDRDYMDSLPPSVGDDVGKGAAPNVVYTYTGKRIAL
YIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL
LPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPPSNRG
RGRFPGAIPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPL
AGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPF
PPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPANSGIPTSDSRGPPPTDP
YGRPPPYDRGDYGPPGRRFTGNNMSIREKLHIPFYGRHTKNNTQNSGREMDAARTPLSEA
EFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISS
LQDCLHGIESKSYGSGSRRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERH
RDRDRDRDRERDREREYRHR
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgaaccagagcaccaacccctgccaatatcagtcacccctttccaccagaaga
aatggacatgagagagcttgtttagtaaaggagaacaaagcagggccatcacaagaacag
gaggaagaggcagaacaagagggaaccactcagtccctcttcctgagagagctgtgggat
atgcaaaaagatttcagccatcaagcagactgtctcaggagagggtatgtcaaggacccg
gaagggtactggtgggtgttcagtaccactgccttggaggcagaggaggttaagcagctg
cctgccttgcctggtctctcagaggacccttctgttgtgggcttgctgaaggaggctgaa
tatggtgggcatgatcagattgatttatatgatgatgtaatttctccatctgcaaataat
ggagatgctccagaggatcgcgattacatggattctcttccaccatctgttggggatgat
gtaggtaaaggagctgcaccaaatgttgtctatacgtatactggaaagagaattgccttg
tacattggaaatctcacttggtggacaacagatgaagacttaactgaagcagttcattca
ctgggggtaaatgatattttggagataaaattttttgaaaatcgtgctaatggccaatct
aaagggtttgcccttgtgggtgtgggatcggaagcatcctccaaaaagttgatggatttg
ttgcctaaaagagaattgcatgggcagaatcctgttgtaactccgtgtaataaacagttt
ctgagtcaatttgaaatgcagtcaaggaaaaccacacagtctggccagatgtctggcgaa
ggtaaagctggtcccccaggaggaagctcacgagcagcatttccacctagtaatagaggt
cggggccgttttccaggtgccattccaggtggagacagattccctggaccggcagggcca
ggagggccaccaccacctttcccagctggacaaactcccccacgtccacccttaggtcct
cctggcccaccaggcccaccaggccctccacctcctggtcaggtcctcccacctccatta
gctggacctcctaatcgtggtgatcgtccaccaccaccagttctgtttccaggacagcct
tttggtcagcctccacttgggccacttcctccaggccctcctccaccagttccaggctat
gggccaccaccaggtccaccaccacctcagcagggtccacctccacctccgggtccattt
ccccctcgtccgcctggccctcttgggccgcccctgactcttgcacctcctccacatctc
cctgggccacctccaggtgctccaccaccggcaccacatgtgaatccagctttcttcccc
ccacctgccaatagtggcatacccacttcagacagccgtggcccacctccaacagatcca
tatggccgacctccaccatatgacagaggtgactatgggccacctggaaggcgtttcact
ggaaataacatgtccataagagaaaaattacatattccattctatgggaggcacacgaaa
aataatactcaaaactcagggagagaaatggatgctgcaaggacacctctaagtgaagca
gaatttgaagaaatcatgaatagaaatagggcgatctcaagcagtgccatttcgagagct
gtatcagatgccagtgctggggactatggaagtgccatagagaccttggtaactgcaatt
tccttaatcaaacagtccaaagtatctgcagatgatcgctgcaaagtacttattagctct
cttcaggactgccttcatggaattgagtccaagtcctatggttctggatccagaagacgt
gagcgatccagagagagggaccacagtaggtcacgagaaaaaagtaggcgccacaaatca
cgtagtagagatcgtcacgatgactattaccgggaaagaagccgtgagagagagaggcat
cgtgatcgtgacagagatcgtgacagagagcgagacagagagagagaatatcgtcaccgt
taa
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