Entry |
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Name |
(RefSeq) protocadherin Fat 4-like
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KO |
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Organism |
cbrc Corvus brachyrhynchos (American crow)
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Brite |
KEGG Orthology (KO) [BR:cbrc00001]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:cbrc04515]
103614987
Cell adhesion molecules [BR:cbrc04515]
Cadherins
Cadherin related
103614987
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
Unknown
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AA seq |
2922 aa
MLLEMLRREPPRGETLWSRGVTTGQVLSLLLLFGVSDWVSAAIRYAIPEEARRGSAVGNV
VADLALDLGRLPGRRLRVGSGGNKKYFGVDLTSGALLVNERIDREELCGALSPCSLSFEI
VVENPLELYSGTVEIQDINDNDPVFPSSQARLEISESVAAGARFPLESAQDPDVGINSLQ
TYQLSANPNFALDVQTRVDGSKYAELVLEKELDREEQRELNLVLTALDGGSPPRSAHVQI
HIDVVDANDNAPVFNQSTYKASVRENTPSGTLVARISAYDLDDGPNGDIVYSFSSHTPAK
VRELFALDSATGELRVKGQLDYEETKLYEIYLQAKDKGAVPGVAHCKVLVEVVDVNDNAP
EVTVTSVYSLVPEDAAPGTVVALLSVTDLDSHDNGLVNCFISPGIPFMLSSSLKNYYTLK
TEGALDREKAAEYNITITAKDSGSPPLSAVKHILVQVSDVNDNAPKLSQDSYDVYVLENN
VPGIPILNVSATDPDLGRNAHLSYSLLQGDPTFGHLFSINRENGTLYLLTSLDHEDQVEF
SMMVQVQDGGFPPLATNVSVSVFVTDLNDNAPTVLYPHPNTTAPYTDVVAPGTPAGHMVT
KVVAVDADAGYNAWISYTLLQATDPSLFSVGLHSGEIFTALLSTSATISISVAEMVKEVL
NDLTDVAPANDPRRHVTFYLILAVILVSAAFFITMLSVGIFKCYKWRQSKELYNSSRSTT
YRTPGPFHHIDAVRGGFTPPSFYHQVYLTTDSRQSDLLCKKPFTSSPLGSRQGTIRNGEP
GLYHQIVGTASRLPTPAEFLSACCVLGRMRTDMESVSLQRPAWKWQVLSLFLLCGWGWVS
GQIHYSVVEESELGTVVGNVARDLGLKVEELPGRRLRLGSEESLRYFAVRLDSGTLVVSQ
RLDRERLCGAAASCVLSVQVVTENPLQLFRLEVEILDLNDNSPSFPTAHRTLRIAESATV
AARFPLESAQDPDVGTNAVSSYRLSPNSHFSLDVKQQPDGKLFPELVLERALDREEQPEA
QLVLTAVDGGSPARSGTAQITVQVLDVNDNAPTFDHTTYKVKVPENTPVGAVLLRVNASD
PDEGPNGETQYSFGVHTSDSVRRLFALDPRTGEVRVNGALDFEESRFYEIYVRAHDGGVP
EMEGNCVLQVQVEDANDNPPEVLLTSLLNPVPEDTPPETVVGLFNVRDRDSGANGDVSLD
ISPDVPFAIRSLQNHFSLVTQKSLDRESTSQYAVELIAQDGGSPALTTTLTLLLNISDVN
DNPPRFLQPSYDAFLQENNPPGSLLCTVSASDPDDGVNSRLVYSIESGQVQDAPISSFVH
INPDNGNLYAQRTFDFEVLQVLPVSVVVRDSGSPPLYANVTVYIFVLDQNDHPPTILHPA
SDSDVPEPQRVPLSAPPGYLVAKVTAVDADAGHNAWLSYRLLPQSTDPSLFHVSLYTGEV
RTARAFQDRDMAVQQLFVQVMDNGDPPLSTTATITVALEEIRYSIPEELTRGAFVGNIAK
DLGTDVAKLAAANLQVLSDSDSQYFSVNVNTGVIMVSERIDREQLCGQNPRCFLHLKLAI
ENPVEFYRIEVEILDINDNPPEFPSDEVSLRIYELASLGARFPIQPAQDPDVGTNTLQTY
HLSANDNFNLNVKARTDGGKFPELVLERALDREFRAFHYLVLTAEDGGSPPQSSKIRITI
QVLDANDNHPVFDRPSYGARLVENSPLGTLVVKLNATDVDEGPNGDIRYSLSSHNSAALR
QIFAIDEQTGEIRVQGNLDFEEATVYEIEVEAKDMGSPTMEEHCSVVVEITDVNDNAPEV
ILTSFSSTLSEDALPGTVVAVIHVRDRDSGEQGKVLCHVSPDLPFQLRKDYEHQYSLLTS
TRLDREHVAYYNVTVSASDLGHPPLSRHTILPITLIDVNDNAPQFEQASYEVLVAENNPV
GSVLVTVSAADPDSEQNSRLSYSILRAGGTDPGLDPTRYLSIHPTNGQVTAKFPFDYEQT
TYLQFHVEVSDGGSPALRNRTLVHVFVVDQNDNAPRVHFPRAGEDSATQFRISPSIVPPA
LITKVVAIDADSGRNAWLSYHLVEATDLGLFSVSLRSGEVRIMRALQETDASAHELLVVV
RDAGEPPLSTAVTLVVLVEEKGPEALQGSEARAADALSCLPAPSCAQLHYSVPEDREPGF
SVGDLAKDLGVEVRSLAARNLRLVSEGGQRHFQVDLAAGVLLLDSRLDREALCGQSPTCS
LHLQLVMENPLQLHRVEVDVLDVNDNAPQFPKPEVVLEITEVANPGTRLPLEVAEDPDMG
SNSISTYELSPSKHFALSINVRGDGVKMPEIVLEKALDREKVPVHHLTLTALDGGNPVKS
GTAKVTIHVLDANDNPPVCDPPISKVLLEENVPVGTLVTKLNVTDLDEGPNGDVEYSFKT
SNNAPGKFTKLFSLDARTGEIRTKAPLDYEESSAYEIAVRARDKGSPAMEGHCHLRVELI
DINDNSPEIVLTSVSSPVQEDAAPGTVIALIGVKDSDSGDNGQVRLQIAKELPFKLVSSF
KEHFSLVTSGPLDREKASGYNITVRAVDSGSPQRATQKTFYLRIADVNDNAPNFSSPFDT
AHVQENSLPGTSVFSVSASDPDEGSNAKLSYSILDNGMQDVPISTYFRIDQDNGTIYTVR
ALDYEQDKVFQVPVEVKDAGSPALSSTAVVHVFVLDENDNAPNIVYPSVPKGSAFHQAIP
ALAEPGYLVTKIVAVDADSGHNAWLSYQLQESAEALPFQVERRSGEIRVAQALRESEDSH
RLVVEVRDNGTPSLSASVVIVISPEENSVQDFSKSLDLPQSSPEDTNLTLYLIISLVSIS
LVSCVMFGLVAARCLKAGSASWTFTGQMKPDGFIKYLDVGGAGLTSQAQNYTSCFSPMSD
QSDFLFVKPFSHSSTAETVAAYEQVTSTLASPCDGRLRSGKL |
NT seq |
8769 nt +upstreamnt +downstreamnt
atgctcctggaaatgctgcggcgggagccgccccgcggcgagactctgtggagccgcggg
gtgacgacggggcaggtattgagcctcttgcttttgttcggcgtttccgactgggtttcc
gccgcgattcgctatgcgatccccgaggaggcgcggagaggctccgcggtggggaatgtg
gtagccgacctggcgctggacctcgggcggctgccgggacgccgattgcgggtggggtcc
ggcggcaataagaagtacttcggggtggatctgacgagcggagcgctgctggtgaacgag
aggatagaccgggaggagctctgcggcgcgctctctccctgctccctcagctttgagatc
gtggtggaaaacccgctcgagctgtacagcggcaccgtagagatccaggacatcaatgac
aacgacccggtttttcccagcagccaggcgaggctggaaatcagtgagtcggtggctgcc
ggagcgcgcttcccgctagagagcgcgcaagaccccgatgtgggaattaactctttgcag
acctaccagctcagcgccaacccgaactttgcgctcgacgtgcagacgagggtggatggc
agcaagtacgcggaactggtgctagagaaggagctggacagggaggagcaaagggagctg
aatttggtcttgactgcgctggatggaggcagcccgccacggtcggcccatgtgcagatc
cacattgacgttgtagatgccaacgataatgccccggtcttcaaccagtccacctataag
gcgagtgtgagggagaacacccccagcggtaccctggtcgccaggatcagtgcgtacgat
ctggatgatgggcccaatggagacatcgtctactccttcagtagccacacccccgccaag
gtacgagaactctttgctctggactcagccacaggggagttgagggtcaagggacagctg
gactatgaggaaacgaagctgtatgagatttacttacaagctaaagacaagggagccgtt
cctggtgtggctcattgcaaagtgctggtagaagtcgtggatgtgaatgacaatgctcca
gaggtgacagtgacttctgtgtacagccttgtgcctgaagatgcagccccagggacggtc
gtagctctgctgagtgtaacagacttggactcccatgacaacggcctggtgaactgtttt
atttcccctgggatccccttcatgctcagctcctccctcaaaaattactacacattgaaa
acagaaggagctctggaccgggaaaaggcagcagagtataacatcactatcacagccaag
gactcgggctcaccacccttgtctgcagtaaaacacatcctggtgcaggtatcagatgtc
aatgacaacgcgcccaagttgtcccaggactcctatgatgtctatgttctggagaacaac
gtgcccggcatccccatccttaatgtgagcgccacagatccggacctcgggcgcaatgcc
cacctctcctattcccttttgcagggtgaccccacttttggccacctcttctccatcaac
cgggagaatggcaccctctacctgctcacctccctggaccatgaggaccaggtggagttc
agcatgatggtgcaggtccaggacggcggctttccgcctctggccactaatgtctcagtc
agtgtgtttgtcactgacctcaatgacaatgccccaacggtgctgtaccctcatcccaac
accaccgccccctacactgatgtggtggcaccaggcactcctgccgggcacatggtcacc
aaggtggtggcggtggatgcggatgcagggtacaatgcctggatctcctataccctgttg
caggccactgaccccagcctcttctcagttgggctgcacagtggggagatcttcacggcc
ctgctgtccaccagtgccactatctccatctctgtggccgagatggtcaaggaggtgctc
aatgacctcactgatgtggcgcctgccaatgatcccaggagacatgtgactttctatctc
atcctggctgtgattttggtgtcagcagccttcttcatcaccatgttgtccgtgggcatc
ttcaagtgctacaagtggaggcagtcaaaggagctgtacaacagctccaggagtaccaca
tacaggacaccagggcctttccaccacattgatgccgtgcggggtggcttcacgccaccc
agcttctaccaccaggtctatctcaccacggactctcgccagagtgatctcctgtgtaaa
aagcccttcacttccagccccttagggagccgccagggcaccataaggaatggtgagcca
gggctgtaccaccagattgtgggcaccgccagccggctccccacacctgccgagttcctc
agtgcctgctgtgtcctgggccggatgcgcacggacatggagagtgtcagcctccagcga
cccgcctggaaatggcaagtactgagtttgtttttgctctgcggctggggctgggtctcc
gggcagatccactactcggtggttgaggagtcagagttgggaaccgtggtggggaacgtg
gcccgggacctgggcttgaaggtggaggagctgccaggtcgcaggctgcgcctgggctca
gaggagagcttgcgctacttcgccgtgcgcctggacagcggcacgctggtggtgagccag
cggctggaccgcgagcgtctgtgcggagcagctgccagctgcgtgctgtcggtgcaggtg
gtgacagagaaccccctgcagctcttccgcctggaagtggagatcctggacctgaacgac
aactccccgagcttccccactgctcaccgcaccctgcgcatcgccgagtctgccacggtg
gctgcgcgcttccccctggagagcgcgcaggaccccgacgtgggcactaatgctgtgagc
tcctaccggctgagcccgaactcccacttctccctggatgtcaagcagcagccggatggc
aaactcttcccggagctggtgctggagcgtgccctggaccgggaagagcagccagaagcg
cagctggtgctgacggccgtggatgggggaagcccagctcgctcgggcacggcgcagata
acggtccaggtcctagatgtcaatgacaacgcacccacctttgaccacaccacatacaag
gtgaaagtcccagaaaacacacctgtgggggctgtgctcctccgggtcaacgcgtctgac
cccgatgagggccccaatggggagacacagtactccttcggggttcacacctccgactcc
gtgcggaggctctttgccctggatccccgcactggcgaggtccgggtgaatggggccctg
gactttgaggaatcgcgtttctatgagatctatgtgcgagcccacgacggaggggtccca
gagatggagggcaattgtgtgctgcaggtgcaagtggaggatgccaatgacaaccccccg
gaggtgctgctcacctccctgttgaatccggtgccagaagacaccccaccggagactgtc
gtggggctcttcaatgtacgagaccgagactcaggggccaatggggatgtgagcctggac
atctcccccgatgtgccttttgccatcaggtcccttcagaaccacttctccctggtcacc
cagaagagcctggaccgagagtctacctcacagtacgcagtggagctgatcgctcaggat
ggtggttctcctgccctcaccaccacactcacgctgctcctcaatatatctgatgtgaat
gacaaccccccacgcttcttgcagccctcctacgatgcctttctccaggagaacaacccg
cctggctccctgctgtgcaccgtctctgcctcagatcctgacgacggggttaattcccgg
cttgtttactccatagagagtggccaagtgcaggatgcccccatctcttccttcgtccac
atcaaccctgacaatggcaatctctacgctcagcgcacctttgactttgaggtgctgcag
gtcctgccggtgtctgtggttgtgagggactcggggtccccccccctctatgccaatgtt
accgtctacatctttgtgctggaccagaatgaccatccccccaccatcctgcaccctgcc
agtgacagcgatgtgccggaaccccagagggtcccgctgtctgccccaccgggctacctg
gtggccaaggtgacagcagtggatgcggatgctgggcacaatgcctggctctcgtaccga
ctcttgccgcagtccacagacccctccttgttccacgtgtcgctgtacaccggggaggtg
cggacggcgcgtgccttccaggacagggatatggcagtgcagcagctctttgtccaggtg
atggacaacggtgaccctccgctctccaccactgccaccatcactgtggccctggaggag
atccggtacagcatcccggaggagctcacacggggtgcttttgtgggcaatattgcgaag
gacctgggcaccgatgtggcaaaactggcggcagctaatctgcaggtactgtccgattcg
gattcccagtatttctccgtcaatgtgaacactggtgttattatggtcagcgagaggata
gaccgggagcagctctgcgggcagaacccacgctgcttcctccacttgaaacttgccatc
gagaacccagtggagttttaccgtattgaggtggagatcttggatatcaatgacaacccc
ccggagttccccagtgatgaggtttccttgcgcatctacgagctggcgtctctgggtgcc
cgcttccccatccagccagcccaggaccctgacgtgggcaccaacaccttgcagacctat
cacctgagtgccaatgacaacttcaacctcaacgtgaaggcccgcactgatggtgggaag
ttccctgagctggtgctggagcgggccctggaccgggaattcagagctttccactacctg
gtcctgactgctgaagatgggggctctcccccacagtccagcaagatccgcatcactatt
caggttctggatgccaatgacaaccacccggtctttgacagaccatcatacggagcacgc
ttggtggagaactcgccgctgggcaccctcgtggtgaagttaaatgccaccgatgtggac
gaaggacccaacggagacatccgctactccctcagtagccacaactcagctgccttacgc
cagatctttgccatcgatgagcaaactggggagattcgtgtccagggcaacctggacttt
gaggaggcgacagtgtatgagattgaagtggaggccaaggacatggggtcacccacgatg
gaggagcactgcagtgtggtggtggaaatcactgatgtcaatgacaacgcccccgaggtc
attcttacctccttctcaagcaccctgagcgaggatgcgctgccgggcacagtggtggcc
gtgatacacgtcagagacagggactctggcgagcagggcaaggtcctgtgtcacgtgtct
ccagatcttcccttccagctgcgtaaggactacgagcaccagtactcgctgctcaccagc
acccgtttggaccgggagcatgttgcctactacaatgtcaccgtctctgcctcggacctg
ggccatcccccactctcccgccacaccatcttgccaatcaccctgatagatgtcaatgac
aacgctccccagtttgagcaagcgtcctatgaagtgctggtggcagaaaacaacccagtg
ggcagtgtgctggttacagtctctgctgccgaccctgactcggagcagaattcccgcctg
tcctactccatcctgcgagctggtgggacagatccaggcctggatcctactcgctacctc
tcgatacatcccacgaatgggcaggtcactgccaaattcccttttgactatgagcaaacc
acctatctccagttccatgtggaggtctctgatggtggctccccggccctgaggaacaga
acactggttcatgtttttgtagtggaccagaacgacaatgccccacgggtgcatttcccc
agggctggggaggactctgctactcagttccgaatttccccttccattgtccctcctgcc
ctcatcaccaaggtggtggcaatagatgcggactcggggcgcaatgcttggctatcctac
cacctcgtggaagccacagacctggggcttttcagcgtgtccctgcgttctggggaggtc
cggatcatgcgggctctgcaggagacggacgcctctgcgcacgaactgctggtggtggtc
cgggatgccggggagcccccactctccacagccgtcacactggtggtgctggtggaggag
aagggtccggaggccctgcagggctccgaggctcgggctgctgatgccctctcctgcctg
ccggctcccagctgcgcccagctccactactccgtgcccgaggatcgcgagccgggcttc
tctgtgggcgacctggccaaggacttaggggtggaggtgcggagcctggctgctcgcaac
ctgcgcctggtgagcgagggtgggcagcggcacttccaggtggacctggcagcaggtgtg
ctgctcctggacagcaggctggaccgggaggcactgtgtggacagagccccacgtgctct
ctgcacctccagctcgtcatggagaatcccctccagctccaccgtgttgaggtggacgtc
ctcgacgtgaacgacaacgcgccccagttccccaagccggaggtggtgctggagatcact
gaggtagccaaccctgggactcggctgcccttggaggtagcagaagacccggatatgggc
tccaactccatctccacctacgagctcagccccagcaagcattttgccctgagcatcaac
gtgagaggagatggtgttaaaatgcccgagatcgtgcttgaaaaagcactggatagagag
aaagtgcctgttcatcatctaacactgacagccctggatggagggaatcctgtgaaatct
ggcactgccaaggttaccatccatgtcctggatgcaaatgacaaccctcctgtctgtgac
ccacccatatccaaggtacttctggaggagaatgtgccagtgggcactctggtcaccaag
ctgaatgtcaccgacttggatgaaggtcccaacggggatgtggaatattctttcaaaact
agcaataatgcacctggtaaattcaccaagctgttctccttagatgctcggacaggggag
atcagaaccaaagccccgctggattatgaggaatccagtgcttacgagattgcggttcga
gccagggacaagggatctccagccatggaaggccactgtcacctgcgagtggaattaatt
gatatcaatgataatagcccagagattgtgctgacctctgtctccagcccagtgcaggag
gatgcagccccaggcactgtgatcgccctcattggcgtgaaggacagcgattctggtgac
aatgggcaggtccgtctacagatagcaaaagagctcccatttaaactagtgtcgtctttc
aaagagcatttctctctggtcaccagtggtccccttgatcgggagaaggccagtggatac
aacatcacggtgagggctgtggattcagggtccccccagagggccacacaaaaaaccttt
tatctccgcattgctgacgtgaatgataacgcaccgaatttctccagcccttttgataca
gctcacgttcaggaaaactcccttcctggaacttctgtcttttcagtgtcagcatcagat
cctgatgagggtagcaatgccaagctgtcttactccatcctggacaacgggatgcaggat
gtacccatctcaacctacttccgaatagaccaggacaatggcaccatctacaccgtgcga
gctctggattacgagcaggacaaggtgttccaggtgcccgtggaggtgaaggatgctggg
tctcctgctctgagtagcactgctgtggtccatgtgtttgtcctggacgagaatgacaat
gctcccaacattgtctacccgtctgtccccaagggctctgccttccaccaagccatcccg
gccttggcagagcctggctatctggttaccaaaattgtagcagttgatgctgacagtggc
cataatgcctggctgtcctaccagctgcaggagtctgctgaggctttgcctttccaagtg
gaacgccgctctggagagataagggttgcacaggctctcagggagtcagaagattcccac
aggctggtggtcgaagtgagggacaatggcaccccgtccctctcggcctctgtggtaata
gtcatttctccagaggaaaacagcgtgcaggacttctccaagtccttggacctcccccag
tcttctcccgaggataccaacctaactctttacctcatcatctccttggtgtccatctcc
ctcgtgtcctgcgtgatgtttgggctggtggctgcccggtgtctcaaagctggcagtgcc
agctggaccttcacggggcagatgaagccagatggcttcatcaagtacctggatgtggga
ggagcgggcttgacctcccaggcacagaattacacctcttgtttctcgcccatgtctgac
cagagcgatttcctctttgtaaagcccttcagccattctagcactgcggagaccgtggct
gcctatgagcaggtgaccagcaccttagcgagtccctgcgatgggaggctgaggagtggc
aagctttga |